Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIATL1 (hippocampus abundant transcript-like 1)

Identity

Other alias-
HGNC (Hugo) HIATL1
LocusID (NCBI) 84641
Atlas_Id 64260
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 97136833 and ends at 97223202 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIATL1   23376
Cards
Entrez_Gene (NCBI)HIATL1  84641  hippocampus abundant transcript-like 1
Aliases
GeneCards (Weizmann)HIATL1
Ensembl hg19 (Hinxton)ENSG00000148110 [Gene_View]  chr9:97136833-97223202 [Contig_View]  HIATL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148110 [Gene_View]  chr9:97136833-97223202 [Contig_View]  HIATL1 [Vega]
ICGC DataPortalENSG00000148110
TCGA cBioPortalHIATL1
AceView (NCBI)HIATL1
Genatlas (Paris)HIATL1
WikiGenes84641
SOURCE (Princeton)HIATL1
Genetics Home Reference (NIH)HIATL1
Genomic and cartography
GoldenPath hg19 (UCSC)HIATL1  -     chr9:97136833-97223202 +  9q22.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIATL1  -     9q22.32   [Description]    (hg38-Dec_2013)
EnsemblHIATL1 - 9q22.32 [CytoView hg19]  HIATL1 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBIHIATL1 [Mapview hg19]  HIATL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF255650 AK027659 AK222836 AK300615 AL832415
RefSeq transcript (Entrez)NM_032558
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)HIATL1
Cluster EST : UnigeneHs.555996 [ NCBI ]
CGAP (NCI)Hs.555996
Alternative Splicing GalleryENSG00000148110
Gene ExpressionHIATL1 [ NCBI-GEO ]   HIATL1 [ EBI - ARRAY_EXPRESS ]   HIATL1 [ SEEK ]   HIATL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HIATL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84641
GTEX Portal (Tissue expression)HIATL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SR56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SR56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SR56
Splice isoforms : SwissVarQ5SR56
PhosPhoSitePlusQ5SR56
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_transporter_CS    Tet-R_TetA/multi-R_MdtG   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)HIATL1
DMDM Disease mutations84641
Blocks (Seattle)HIATL1
SuperfamilyQ5SR56
Human Protein AtlasENSG00000148110
Peptide AtlasQ5SR56
HPRD07869
IPIIPI00291042   IPI00909664   IPI00385869   
Protein Interaction databases
DIP (DOE-UCLA)Q5SR56
IntAct (EBI)Q5SR56
FunCoupENSG00000148110
BioGRIDHIATL1
STRING (EMBL)HIATL1
ZODIACHIATL1
Ontologies - Pathways
QuickGOQ5SR56
Ontology : AmiGOtransporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBItransporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkHIATL1
Atlas of Cancer Signalling NetworkHIATL1
Wikipedia pathwaysHIATL1
Orthology - Evolution
OrthoDB84641
GeneTree (enSembl)ENSG00000148110
Phylogenetic Trees/Animal Genes : TreeFamHIATL1
HOVERGENQ5SR56
HOGENOMQ5SR56
Homologs : HomoloGeneHIATL1
Homology/Alignments : Family Browser (UCSC)HIATL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIATL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIATL1
dbVarHIATL1
ClinVarHIATL1
1000_GenomesHIATL1 
Exome Variant ServerHIATL1
ExAC (Exome Aggregation Consortium)HIATL1 (select the gene name)
Genetic variants : HAPMAP84641
Genomic Variants (DGV)HIATL1 [DGVbeta]
DECIPHER (Syndromes)9:97136833-97223202  ENSG00000148110
CONAN: Copy Number AnalysisHIATL1 
Mutations
ICGC Data PortalHIATL1 
TCGA Data PortalHIATL1 
Broad Tumor PortalHIATL1
OASIS PortalHIATL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIATL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIATL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIATL1
DgiDB (Drug Gene Interaction Database)HIATL1
DoCM (Curated mutations)HIATL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIATL1 (select a term)
intoGenHIATL1
Cancer3DHIATL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIATL1
Genetic Testing Registry HIATL1
NextProtQ5SR56 [Medical]
TSGene84641
GENETestsHIATL1
Huge Navigator HIATL1 [HugePedia]
snp3D : Map Gene to Disease84641
BioCentury BCIQHIATL1
ClinGenHIATL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84641
Chemical/Pharm GKB GenePA142671691
Clinical trialHIATL1
Miscellaneous
canSAR (ICR)HIATL1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIATL1
EVEXHIATL1
GoPubMedHIATL1
iHOPHIATL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:42 CET 2017

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