Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIATL2 (hippocampus abundant transcript-like 2)

Identity

Other alias-
HGNC (Hugo) HIATL2
LocusID (NCBI) 84278
Atlas_Id 64261
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 99708327 and ends at 99775862 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIATL2   23672
Cards
Entrez_Gene (NCBI)HIATL2  84278  hippocampus abundant transcript-like 2
Aliases
GeneCards (Weizmann)HIATL2
Ensembl hg19 (Hinxton)ENSG00000196312 [Gene_View]  chr9:99708327-99775862 [Contig_View]  HIATL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196312 [Gene_View]  chr9:99708327-99775862 [Contig_View]  HIATL2 [Vega]
ICGC DataPortalENSG00000196312
TCGA cBioPortalHIATL2
AceView (NCBI)HIATL2
Genatlas (Paris)HIATL2
WikiGenes84278
SOURCE (Princeton)HIATL2
Genetics Home Reference (NIH)HIATL2
Genomic and cartography
GoldenPath hg19 (UCSC)HIATL2  -     chr9:99708327-99775862 -  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIATL2  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblHIATL2 - 9q22.33 [CytoView hg19]  HIATL2 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIHIATL2 [Mapview hg19]  HIATL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127385 BC005058
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)HIATL2
Cluster EST : UnigeneHs.610084 [ NCBI ]
CGAP (NCI)Hs.610084
Alternative Splicing GalleryENSG00000196312
Gene ExpressionHIATL2 [ NCBI-GEO ]   HIATL2 [ EBI - ARRAY_EXPRESS ]   HIATL2 [ SEEK ]   HIATL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HIATL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84278
GTEX Portal (Tissue expression)HIATL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZR4
Splice isoforms : SwissVarQ5VZR4
PhosPhoSitePlusQ5VZR4
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)   
Domains : Interpro (EBI)MFS_dom    Sugar_transporter_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HIATL2
DMDM Disease mutations84278
Blocks (Seattle)HIATL2
SuperfamilyQ5VZR4
Human Protein AtlasENSG00000196312
Peptide AtlasQ5VZR4
HPRD17102
IPIIPI00031137   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZR4
IntAct (EBI)Q5VZR4
FunCoupENSG00000196312
BioGRIDHIATL2
STRING (EMBL)HIATL2
ZODIACHIATL2
Ontologies - Pathways
QuickGOQ5VZR4
Ontology : AmiGOtransporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBItransporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkHIATL2
Atlas of Cancer Signalling NetworkHIATL2
Wikipedia pathwaysHIATL2
Orthology - Evolution
OrthoDB84278
GeneTree (enSembl)ENSG00000196312
Phylogenetic Trees/Animal Genes : TreeFamHIATL2
HOVERGENQ5VZR4
HOGENOMQ5VZR4
Homologs : HomoloGeneHIATL2
Homology/Alignments : Family Browser (UCSC)HIATL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIATL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIATL2
dbVarHIATL2
ClinVarHIATL2
1000_GenomesHIATL2 
Exome Variant ServerHIATL2
ExAC (Exome Aggregation Consortium)HIATL2 (select the gene name)
Genetic variants : HAPMAP84278
Genomic Variants (DGV)HIATL2 [DGVbeta]
DECIPHER (Syndromes)9:99708327-99775862  ENSG00000196312
CONAN: Copy Number AnalysisHIATL2 
Mutations
ICGC Data PortalHIATL2 
TCGA Data PortalHIATL2 
Broad Tumor PortalHIATL2
OASIS PortalHIATL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIATL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIATL2
DgiDB (Drug Gene Interaction Database)HIATL2
DoCM (Curated mutations)HIATL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIATL2 (select a term)
intoGenHIATL2
Cancer3DHIATL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIATL2
Genetic Testing Registry HIATL2
NextProtQ5VZR4 [Medical]
TSGene84278
GENETestsHIATL2
Huge Navigator HIATL2 [HugePedia]
snp3D : Map Gene to Disease84278
BioCentury BCIQHIATL2
ClinGenHIATL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84278
Chemical/Pharm GKB GenePA134993447
Clinical trialHIATL2
Miscellaneous
canSAR (ICR)HIATL2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIATL2
EVEXHIATL2
GoPubMedHIATL2
iHOPHIATL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:42 CET 2017

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