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HID1 (HID1 domain containing)

Identity

Alias_namesC17orf28
chromosome 17 open reading frame 28
Alias_symbol (synonym)DMC1
HID-1
Other alias
HGNC (Hugo) HID1
LocusID (NCBI) 283987
Atlas_Id 866
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74950744 and ends at 74972805 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HID1   15736
Cards
Entrez_Gene (NCBI)HID1  283987  HID1 domain containing
AliasesC17orf28; DMC1; HID-1
GeneCards (Weizmann)HID1
Ensembl hg19 (Hinxton)ENSG00000167861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167861 [Gene_View]  chr17:74950744-74972805 [Contig_View]  HID1 [Vega]
ICGC DataPortalENSG00000167861
TCGA cBioPortalHID1
AceView (NCBI)HID1
Genatlas (Paris)HID1
WikiGenes283987
SOURCE (Princeton)HID1
Genetics Home Reference (NIH)HID1
Genomic and cartography
GoldenPath hg38 (UCSC)HID1  -     chr17:74950744-74972805 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HID1  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblHID1 - 17q25.1 [CytoView hg19]  HID1 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIHID1 [Mapview hg19]  HID1 [Mapview hg38]
OMIM605752   
Gene and transcription
Genbank (Entrez)AK074401 AK075111 AK095565 AK125514 AK304081
RefSeq transcript (Entrez)NM_030630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HID1
Cluster EST : UnigeneHs.11067 [ NCBI ]
CGAP (NCI)Hs.11067
Alternative Splicing GalleryENSG00000167861
Gene ExpressionHID1 [ NCBI-GEO ]   HID1 [ EBI - ARRAY_EXPRESS ]   HID1 [ SEEK ]   HID1 [ MEM ]
Gene Expression Viewer (FireBrowse)HID1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283987
GTEX Portal (Tissue expression)HID1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV36
Splice isoforms : SwissVarQ8IV36
PhosPhoSitePlusQ8IV36
Domains : Interpro (EBI)Hid-1/Ecm30   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HID1
DMDM Disease mutations283987
Blocks (Seattle)HID1
SuperfamilyQ8IV36
Human Protein AtlasENSG00000167861
Peptide AtlasQ8IV36
HPRD05766
IPIIPI00783706   IPI00607714   IPI00247634   IPI00984983   IPI00983689   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV36
IntAct (EBI)Q8IV36
FunCoupENSG00000167861
BioGRIDHID1
STRING (EMBL)HID1
ZODIACHID1
Ontologies - Pathways
QuickGOQ8IV36
Ontology : AmiGOGolgi trans cisterna  protein binding  cytoplasm  Golgi apparatus  Golgi medial cisterna  cytosol  cytoplasmic microtubule  intracellular protein transport  response to brefeldin A  extracellular exosome  extrinsic component of Golgi membrane  
Ontology : EGO-EBIGolgi trans cisterna  protein binding  cytoplasm  Golgi apparatus  Golgi medial cisterna  cytosol  cytoplasmic microtubule  intracellular protein transport  response to brefeldin A  extracellular exosome  extrinsic component of Golgi membrane  
NDEx NetworkHID1
Atlas of Cancer Signalling NetworkHID1
Wikipedia pathwaysHID1
Orthology - Evolution
OrthoDB283987
GeneTree (enSembl)ENSG00000167861
Phylogenetic Trees/Animal Genes : TreeFamHID1
HOVERGENQ8IV36
HOGENOMQ8IV36
Homologs : HomoloGeneHID1
Homology/Alignments : Family Browser (UCSC)HID1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHID1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HID1
dbVarHID1
ClinVarHID1
1000_GenomesHID1 
Exome Variant ServerHID1
ExAC (Exome Aggregation Consortium)HID1 (select the gene name)
Genetic variants : HAPMAP283987
Genomic Variants (DGV)HID1 [DGVbeta]
DECIPHERHID1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHID1 
Mutations
ICGC Data PortalHID1 
TCGA Data PortalHID1 
Broad Tumor PortalHID1
OASIS PortalHID1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHID1
BioMutasearch HID1
DgiDB (Drug Gene Interaction Database)HID1
DoCM (Curated mutations)HID1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HID1 (select a term)
intoGenHID1
Cancer3DHID1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605752   
Orphanet
MedgenHID1
Genetic Testing Registry HID1
NextProtQ8IV36 [Medical]
TSGene283987
GENETestsHID1
Target ValidationHID1
Huge Navigator HID1 [HugePedia]
snp3D : Map Gene to Disease283987
BioCentury BCIQHID1
ClinGenHID1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283987
Chemical/Pharm GKB GenePA25583
Clinical trialHID1
Miscellaneous
canSAR (ICR)HID1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHID1
EVEXHID1
GoPubMedHID1
iHOPHID1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:28 CEST 2017

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