Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HIGD1A (HIG1 hypoxia inducible domain family, member 1A)

Identity

Other namesHIG1
RCF1a
HGNC (Hugo) HIGD1A
LocusID (NCBI) 25994
Location 3p22.1
Location_base_pair Starts at 42824400 and ends at 42845934 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HIGD1A   29527
Cards
Entrez_Gene (NCBI)HIGD1A  25994  HIG1 hypoxia inducible domain family, member 1A
GeneCards (Weizmann)HIGD1A
Ensembl (Hinxton) [Gene_View]  chr3:42824400-42845934 [Contig_View]  HIGD1A [Vega]
AceView (NCBI)HIGD1A
Genatlas (Paris)HIGD1A
WikiGenes25994
SOURCE (Princeton)NM_001099668 NM_001099669 NM_014056
Genomic and cartography
GoldenPath (UCSC)HIGD1A  -  3p22.1   chr3:42824400-42845934 -  3p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIGD1A - 3p22.1 [CytoView]
Mapping of homologs : NCBIHIGD1A [Mapview]
Gene and transcription
Genbank (Entrez)AF077034 AF145385 AK225461 AK225571 AK311815
RefSeq transcript (Entrez)NM_001099668 NM_001099669 NM_014056
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)HIGD1A
Cluster EST : UnigeneHs.728813 [ NCBI ]
CGAP (NCI)Hs.728813
Alternative Splicing : Fast-db (Paris)GSHG0021640
Gene ExpressionHIGD1A [ NCBI-GEO ]     HIGD1A [ SEEK ]   HIGD1A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y241 (Uniprot)
NextProtQ9Y241  [Medical]
With graphics : InterProQ9Y241
Splice isoforms : SwissVarQ9Y241 (Swissvar)
Domaine pattern : Prosite (Expaxy)HIG1 (PS51503)   
Domains : Interpro (EBI)Hypoxia_induced_domain   
Related proteins : CluSTrQ9Y241
Domain families : Pfam (Sanger)HIG_1_N (PF04588)   
Domain families : Pfam (NCBI)pfam04588   
DMDM Disease mutations25994
Blocks (Seattle)Q9Y241
PDB (SRS)2LOM   
PDB (PDBSum)2LOM   
PDB (IMB)2LOM   
PDB (RSDB)2LOM   
Peptide AtlasQ9Y241
HPRD13651
IPIIPI00295621   IPI00856008   IPI00926995   IPI00927455   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y241
IntAct (EBI)Q9Y241
BioGRIDHIGD1A
InParanoidQ9Y241
Interologous Interaction database Q9Y241
IntegromeDBHIGD1A
STRING (EMBL)HIGD1A
Ontologies - Pathways
Ontology : AmiGOmitochondrial inner membrane  response to stress  integral to membrane  negative regulation of apoptotic process  protein complex  oxidation-reduction process  respiratory chain  
Ontology : EGO-EBImitochondrial inner membrane  response to stress  integral to membrane  negative regulation of apoptotic process  protein complex  oxidation-reduction process  respiratory chain  
REACTOMEHIGD1A
Protein Interaction DatabaseHIGD1A
Wikipedia pathwaysHIGD1A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HIGD1A
SNP (GeneSNP Utah)HIGD1A
SNP : HGBaseHIGD1A
Genetic variants : HAPMAPHIGD1A
1000_GenomesHIGD1A 
Somatic Mutations in Cancer : COSMICHIGD1A 
CONAN: Copy Number AnalysisHIGD1A 
Mutations and Diseases : HGMDHIGD1A
OMIM
GENETestsHIGD1A
Disease Genetic AssociationHIGD1A
Huge Navigator HIGD1A [HugePedia]  HIGD1A [HugeCancerGEM]
Genomic VariantsHIGD1A  HIGD1A [DGVbeta]
Exome VariantHIGD1A
dbVarHIGD1A
ClinVarHIGD1A
snp3D : Map Gene to Disease25994
General knowledge
Homologs : HomoloGeneHIGD1A
Homology/Alignments : Family Browser (UCSC)HIGD1A
Phylogenetic Trees/Animal Genes : TreeFamHIGD1A
Chemical/Protein Interactions : CTD25994
Chemical/Pharm GKB GenePA142671681
Clinical trialHIGD1A
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineHIGD1A
iHOPHIGD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:01:05 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.