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HIGD1B (HIG1 hypoxia inducible domain family member 1B)

Identity

Alias_namesHIG1 domain family, member 1B
HIG1 hypoxia inducible domain family, member 1B
Alias_symbol (synonym)CLST11240
CLST11240-15
Other alias
HGNC (Hugo) HIGD1B
LocusID (NCBI) 51751
Atlas_Id 64267
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44846353 and ends at 44850480 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIGD1B   24318
Cards
Entrez_Gene (NCBI)HIGD1B  51751  HIG1 hypoxia inducible domain family member 1B
AliasesCLST11240; CLST11240-15
GeneCards (Weizmann)HIGD1B
Ensembl hg19 (Hinxton)ENSG00000131097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131097 [Gene_View]  chr17:44846353-44850480 [Contig_View]  HIGD1B [Vega]
ICGC DataPortalENSG00000131097
TCGA cBioPortalHIGD1B
AceView (NCBI)HIGD1B
Genatlas (Paris)HIGD1B
WikiGenes51751
SOURCE (Princeton)HIGD1B
Genetics Home Reference (NIH)HIGD1B
Genomic and cartography
GoldenPath hg38 (UCSC)HIGD1B  -     chr17:44846353-44850480 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIGD1B  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblHIGD1B - 17q21.31 [CytoView hg19]  HIGD1B - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIHIGD1B [Mapview hg19]  HIGD1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB038021 AB038022 AB095269 AW207459 BC020667
RefSeq transcript (Entrez)NM_001271880 NM_016438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIGD1B
Cluster EST : UnigeneHs.287963 [ NCBI ]
CGAP (NCI)Hs.287963
Alternative Splicing GalleryENSG00000131097
Gene ExpressionHIGD1B [ NCBI-GEO ]   HIGD1B [ EBI - ARRAY_EXPRESS ]   HIGD1B [ SEEK ]   HIGD1B [ MEM ]
Gene Expression Viewer (FireBrowse)HIGD1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51751
GTEX Portal (Tissue expression)HIGD1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P298   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P298  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P298
Splice isoforms : SwissVarQ9P298
PhosPhoSitePlusQ9P298
Domaine pattern : Prosite (Expaxy)HIG1 (PS51503)   
Domains : Interpro (EBI)Hypoxia_induced_domain   
Domain families : Pfam (Sanger)HIG_1_N (PF04588)   
Domain families : Pfam (NCBI)pfam04588   
Conserved Domain (NCBI)HIGD1B
DMDM Disease mutations51751
Blocks (Seattle)HIGD1B
PDB (SRS)2LON   
PDB (PDBSum)2LON   
PDB (IMB)2LON   
PDB (RSDB)2LON   
Structural Biology KnowledgeBase2LON   
SCOP (Structural Classification of Proteins)2LON   
CATH (Classification of proteins structures)2LON   
SuperfamilyQ9P298
Human Protein AtlasENSG00000131097
Peptide AtlasQ9P298
HPRD16724
IPIIPI00001845   
Protein Interaction databases
DIP (DOE-UCLA)Q9P298
IntAct (EBI)Q9P298
FunCoupENSG00000131097
BioGRIDHIGD1B
STRING (EMBL)HIGD1B
ZODIACHIGD1B
Ontologies - Pathways
QuickGOQ9P298
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkHIGD1B
Atlas of Cancer Signalling NetworkHIGD1B
Wikipedia pathwaysHIGD1B
Orthology - Evolution
OrthoDB51751
GeneTree (enSembl)ENSG00000131097
Phylogenetic Trees/Animal Genes : TreeFamHIGD1B
HOVERGENQ9P298
HOGENOMQ9P298
Homologs : HomoloGeneHIGD1B
Homology/Alignments : Family Browser (UCSC)HIGD1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIGD1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIGD1B
dbVarHIGD1B
ClinVarHIGD1B
1000_GenomesHIGD1B 
Exome Variant ServerHIGD1B
ExAC (Exome Aggregation Consortium)HIGD1B (select the gene name)
Genetic variants : HAPMAP51751
Genomic Variants (DGV)HIGD1B [DGVbeta]
DECIPHERHIGD1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIGD1B 
Mutations
ICGC Data PortalHIGD1B 
TCGA Data PortalHIGD1B 
Broad Tumor PortalHIGD1B
OASIS PortalHIGD1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIGD1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIGD1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIGD1B
DgiDB (Drug Gene Interaction Database)HIGD1B
DoCM (Curated mutations)HIGD1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIGD1B (select a term)
intoGenHIGD1B
Cancer3DHIGD1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIGD1B
Genetic Testing Registry HIGD1B
NextProtQ9P298 [Medical]
TSGene51751
GENETestsHIGD1B
Huge Navigator HIGD1B [HugePedia]
snp3D : Map Gene to Disease51751
BioCentury BCIQHIGD1B
ClinGenHIGD1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51751
Chemical/Pharm GKB GenePA142671682
Clinical trialHIGD1B
Miscellaneous
canSAR (ICR)HIGD1B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIGD1B
EVEXHIGD1B
GoPubMedHIGD1B
iHOPHIGD1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:15:32 CEST 2017

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