Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HIGD1C (HIG1 hypoxia inducible domain family member 1C)

Identity

Alias_namesHIG1 domain family, member 1C
HIG1 hypoxia inducible domain family, member 1C
Alias_symbol (synonym)Gm921
Other aliasGM921
HGNC (Hugo) HIGD1C
LocusID (NCBI) 613227
Atlas_Id 64268
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 50953999 and ends at 50970506 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIGD1C   28044
Cards
Entrez_Gene (NCBI)HIGD1C  613227  HIG1 hypoxia inducible domain family member 1C
AliasesGM921
GeneCards (Weizmann)HIGD1C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:50953999-50970506 [Contig_View]  HIGD1C [Vega]
TCGA cBioPortalHIGD1C
AceView (NCBI)HIGD1C
Genatlas (Paris)HIGD1C
WikiGenes613227
SOURCE (Princeton)HIGD1C
Genetics Home Reference (NIH)HIGD1C
Genomic and cartography
GoldenPath hg38 (UCSC)HIGD1C  -     chr12:50953999-50970506 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIGD1C  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblHIGD1C - 12q13.12 [CytoView hg19]  HIGD1C - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIHIGD1C [Mapview hg19]  HIGD1C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC172304 DW009649
RefSeq transcript (Entrez)NM_001109619
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIGD1C
Cluster EST : UnigeneHs.702849 [ NCBI ]
CGAP (NCI)Hs.702849
Gene ExpressionHIGD1C [ NCBI-GEO ]   HIGD1C [ EBI - ARRAY_EXPRESS ]   HIGD1C [ SEEK ]   HIGD1C [ MEM ]
Gene Expression Viewer (FireBrowse)HIGD1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)613227
GTEX Portal (Tissue expression)HIGD1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MV81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MV81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MV81
Splice isoforms : SwissVarA8MV81
PhosPhoSitePlusA8MV81
Domaine pattern : Prosite (Expaxy)HIG1 (PS51503)   
Domains : Interpro (EBI)Hypoxia_induced_domain   
Domain families : Pfam (Sanger)HIG_1_N (PF04588)   
Domain families : Pfam (NCBI)pfam04588   
Conserved Domain (NCBI)HIGD1C
DMDM Disease mutations613227
Blocks (Seattle)HIGD1C
SuperfamilyA8MV81
Peptide AtlasA8MV81
IPIIPI00796647   
Protein Interaction databases
DIP (DOE-UCLA)A8MV81
IntAct (EBI)A8MV81
BioGRIDHIGD1C
STRING (EMBL)HIGD1C
ZODIACHIGD1C
Ontologies - Pathways
QuickGOA8MV81
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkHIGD1C
Atlas of Cancer Signalling NetworkHIGD1C
Wikipedia pathwaysHIGD1C
Orthology - Evolution
OrthoDB613227
Phylogenetic Trees/Animal Genes : TreeFamHIGD1C
HOVERGENA8MV81
HOGENOMA8MV81
Homologs : HomoloGeneHIGD1C
Homology/Alignments : Family Browser (UCSC)HIGD1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIGD1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIGD1C
dbVarHIGD1C
ClinVarHIGD1C
1000_GenomesHIGD1C 
Exome Variant ServerHIGD1C
ExAC (Exome Aggregation Consortium)HIGD1C (select the gene name)
Genetic variants : HAPMAP613227
Genomic Variants (DGV)HIGD1C [DGVbeta]
DECIPHERHIGD1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIGD1C 
Mutations
ICGC Data PortalHIGD1C 
TCGA Data PortalHIGD1C 
Broad Tumor PortalHIGD1C
OASIS PortalHIGD1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIGD1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIGD1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIGD1C
DgiDB (Drug Gene Interaction Database)HIGD1C
DoCM (Curated mutations)HIGD1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIGD1C (select a term)
intoGenHIGD1C
Cancer3DHIGD1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIGD1C
Genetic Testing Registry HIGD1C
NextProtA8MV81 [Medical]
TSGene613227
GENETestsHIGD1C
Target ValidationHIGD1C
Huge Navigator HIGD1C [HugePedia]
snp3D : Map Gene to Disease613227
BioCentury BCIQHIGD1C
ClinGenHIGD1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD613227
Chemical/Pharm GKB GenePA142671683
Clinical trialHIGD1C
Miscellaneous
canSAR (ICR)HIGD1C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIGD1C
EVEXHIGD1C
GoPubMedHIGD1C
iHOPHIGD1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:10:27 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.