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HIGD2B (HIG1 hypoxia inducible domain family member 2B)

Identity

Alias_namesHIGD2BP
HIG1 hypoxia inducible domain family, member 2B (pseudogene)
HIG1 hypoxia inducible domain family, member 2B
Other alias
HGNC (Hugo) HIGD2B
LocusID (NCBI) 123346
Atlas_Id 64270
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 72675782 and ends at 72686149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIGD2B   26984
Cards
Entrez_Gene (NCBI)HIGD2B  123346  HIG1 hypoxia inducible domain family member 2B
AliasesHIGD2BP
GeneCards (Weizmann)HIGD2B
Ensembl hg19 (Hinxton)ENSG00000175202 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175202 [Gene_View]  chr15:72675782-72686149 [Contig_View]  HIGD2B [Vega]
ICGC DataPortalENSG00000175202
TCGA cBioPortalHIGD2B
AceView (NCBI)HIGD2B
Genatlas (Paris)HIGD2B
WikiGenes123346
SOURCE (Princeton)HIGD2B
Genetics Home Reference (NIH)HIGD2B
Genomic and cartography
GoldenPath hg38 (UCSC)HIGD2B  -     chr15:72675782-72686149 -  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIGD2B  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblHIGD2B - 15q24.1 [CytoView hg19]  HIGD2B - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIHIGD2B [Mapview hg19]  HIGD2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040890
RefSeq transcript (Entrez)NM_001350932
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIGD2B
Cluster EST : UnigeneHs.434111 [ NCBI ]
CGAP (NCI)Hs.434111
Alternative Splicing GalleryENSG00000175202
Gene ExpressionHIGD2B [ NCBI-GEO ]   HIGD2B [ EBI - ARRAY_EXPRESS ]   HIGD2B [ SEEK ]   HIGD2B [ MEM ]
Gene Expression Viewer (FireBrowse)HIGD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123346
GTEX Portal (Tissue expression)HIGD2B
Human Protein AtlasENSG00000175202-HIGD2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VC39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VC39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VC39
Splice isoforms : SwissVarQ4VC39
PhosPhoSitePlusQ4VC39
Domaine pattern : Prosite (Expaxy)HIG1 (PS51503)   
Domains : Interpro (EBI)Hypoxia_induced_domain   
Domain families : Pfam (Sanger)HIG_1_N (PF04588)   
Domain families : Pfam (NCBI)pfam04588   
Conserved Domain (NCBI)HIGD2B
DMDM Disease mutations123346
Blocks (Seattle)HIGD2B
SuperfamilyQ4VC39
Human Protein Atlas [tissue]ENSG00000175202-HIGD2B [tissue]
Peptide AtlasQ4VC39
IPIIPI00038613   
Protein Interaction databases
DIP (DOE-UCLA)Q4VC39
IntAct (EBI)Q4VC39
FunCoupENSG00000175202
BioGRIDHIGD2B
STRING (EMBL)HIGD2B
ZODIACHIGD2B
Ontologies - Pathways
QuickGOQ4VC39
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkHIGD2B
Atlas of Cancer Signalling NetworkHIGD2B
Wikipedia pathwaysHIGD2B
Orthology - Evolution
OrthoDB123346
GeneTree (enSembl)ENSG00000175202
Phylogenetic Trees/Animal Genes : TreeFamHIGD2B
HOVERGENQ4VC39
HOGENOMQ4VC39
Homologs : HomoloGeneHIGD2B
Homology/Alignments : Family Browser (UCSC)HIGD2B
Gene fusions - Rearrangements
Fusion: Tumor Portal HIGD2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIGD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIGD2B
dbVarHIGD2B
ClinVarHIGD2B
1000_GenomesHIGD2B 
Exome Variant ServerHIGD2B
ExAC (Exome Aggregation Consortium)ENSG00000175202
GNOMAD BrowserENSG00000175202
Genetic variants : HAPMAP123346
Genomic Variants (DGV)HIGD2B [DGVbeta]
DECIPHERHIGD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIGD2B 
Mutations
ICGC Data PortalHIGD2B 
TCGA Data PortalHIGD2B 
Broad Tumor PortalHIGD2B
OASIS PortalHIGD2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIGD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIGD2B
DgiDB (Drug Gene Interaction Database)HIGD2B
DoCM (Curated mutations)HIGD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIGD2B (select a term)
intoGenHIGD2B
Cancer3DHIGD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIGD2B
Genetic Testing Registry HIGD2B
NextProtQ4VC39 [Medical]
TSGene123346
GENETestsHIGD2B
Target ValidationHIGD2B
Huge Navigator HIGD2B [HugePedia]
snp3D : Map Gene to Disease123346
BioCentury BCIQHIGD2B
ClinGenHIGD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123346
Chemical/Pharm GKB GenePA142671686
Clinical trialHIGD2B
Miscellaneous
canSAR (ICR)HIGD2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIGD2B
EVEXHIGD2B
GoPubMedHIGD2B
iHOPHIGD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:50:31 CET 2017

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