Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIKESHI (Hikeshi, heat shock protein nuclear import factor)

Identity

Alias_namesC11orf73
chromosome 11 open reading frame 73
Alias_symbol (synonym)HSPC138
HSPC179
OPI10
Other aliasHLD13
L7RN6
HGNC (Hugo) HIKESHI
LocusID (NCBI) 51501
Atlas_Id 78525
Location 11q14.2  [Link to chromosome band 11q14]
Location_base_pair Starts at 86302227 and ends at 86345943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIKESHI   26938
Cards
Entrez_Gene (NCBI)HIKESHI  51501  Hikeshi, heat shock protein nuclear import factor
AliasesC11orf73; HLD13; HSPC138; HSPC179; 
L7RN6; OPI10
GeneCards (Weizmann)HIKESHI
Ensembl hg19 (Hinxton)ENSG00000149196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149196 [Gene_View]  chr11:86302227-86345943 [Contig_View]  HIKESHI [Vega]
ICGC DataPortalENSG00000149196
TCGA cBioPortalHIKESHI
AceView (NCBI)HIKESHI
Genatlas (Paris)HIKESHI
WikiGenes51501
SOURCE (Princeton)HIKESHI
Genetics Home Reference (NIH)HIKESHI
Genomic and cartography
GoldenPath hg38 (UCSC)HIKESHI  -     chr11:86302227-86345943 +  11q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIKESHI  -     11q14.2   [Description]    (hg19-Feb_2009)
EnsemblHIKESHI - 11q14.2 [CytoView hg19]  HIKESHI - 11q14.2 [CytoView hg38]
Mapping of homologs : NCBIHIKESHI [Mapview hg19]  HIKESHI [Mapview hg38]
OMIM614908   616881   
Gene and transcription
Genbank (Entrez)AA148558 AF151082 AF161487 AF161527 AK001447
RefSeq transcript (Entrez)NM_001322404 NM_001322407 NM_001322409 NM_016401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIKESHI
Cluster EST : UnigeneHs.283322 [ NCBI ]
CGAP (NCI)Hs.283322
Alternative Splicing GalleryENSG00000149196
Gene ExpressionHIKESHI [ NCBI-GEO ]   HIKESHI [ EBI - ARRAY_EXPRESS ]   HIKESHI [ SEEK ]   HIKESHI [ MEM ]
Gene Expression Viewer (FireBrowse)HIKESHI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51501
GTEX Portal (Tissue expression)HIKESHI
Human Protein AtlasENSG00000149196-HIKESHI [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53FT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53FT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53FT3
Splice isoforms : SwissVarQ53FT3
PhosPhoSitePlusQ53FT3
Domains : Interpro (EBI)DUF775    OPI10   
Domain families : Pfam (Sanger)DUF775 (PF05603)   
Domain families : Pfam (NCBI)pfam05603   
Conserved Domain (NCBI)HIKESHI
DMDM Disease mutations51501
Blocks (Seattle)HIKESHI
PDB (SRS)3WVZ    3WW0   
PDB (PDBSum)3WVZ    3WW0   
PDB (IMB)3WVZ    3WW0   
PDB (RSDB)3WVZ    3WW0   
Structural Biology KnowledgeBase3WVZ    3WW0   
SCOP (Structural Classification of Proteins)3WVZ    3WW0   
CATH (Classification of proteins structures)3WVZ    3WW0   
SuperfamilyQ53FT3
Human Protein Atlas [tissue]ENSG00000149196-HIKESHI [tissue]
Peptide AtlasQ53FT3
HPRD13701
IPIIPI00410091   IPI00981648   IPI00977841   
Protein Interaction databases
DIP (DOE-UCLA)Q53FT3
IntAct (EBI)Q53FT3
FunCoupENSG00000149196
BioGRIDHIKESHI
STRING (EMBL)HIKESHI
ZODIACHIKESHI
Ontologies - Pathways
QuickGOQ53FT3
Ontology : AmiGOintracellular  nucleus  nucleoplasm  cytosol  cytosol  protein import into nucleus  Golgi organization  protein transporter activity  protein transport  lung development  Hsp70 protein binding  cellular response to heat  extracellular exosome  regulation of cellular response to heat  
Ontology : EGO-EBIintracellular  nucleus  nucleoplasm  cytosol  cytosol  protein import into nucleus  Golgi organization  protein transporter activity  protein transport  lung development  Hsp70 protein binding  cellular response to heat  extracellular exosome  regulation of cellular response to heat  
NDEx NetworkHIKESHI
Atlas of Cancer Signalling NetworkHIKESHI
Wikipedia pathwaysHIKESHI
Orthology - Evolution
OrthoDB51501
GeneTree (enSembl)ENSG00000149196
Phylogenetic Trees/Animal Genes : TreeFamHIKESHI
HOVERGENQ53FT3
HOGENOMQ53FT3
Homologs : HomoloGeneHIKESHI
Homology/Alignments : Family Browser (UCSC)HIKESHI
Gene fusions - Rearrangements
Tumor Fusion PortalHIKESHI
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIKESHI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIKESHI
dbVarHIKESHI
ClinVarHIKESHI
1000_GenomesHIKESHI 
Exome Variant ServerHIKESHI
ExAC (Exome Aggregation Consortium)ENSG00000149196
GNOMAD BrowserENSG00000149196
Genetic variants : HAPMAP51501
Genomic Variants (DGV)HIKESHI [DGVbeta]
DECIPHERHIKESHI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIKESHI 
Mutations
ICGC Data PortalHIKESHI 
TCGA Data PortalHIKESHI 
Broad Tumor PortalHIKESHI
OASIS PortalHIKESHI [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIKESHI
BioMutasearch HIKESHI
DgiDB (Drug Gene Interaction Database)HIKESHI
DoCM (Curated mutations)HIKESHI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIKESHI (select a term)
intoGenHIKESHI
Cancer3DHIKESHI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614908    616881   
Orphanet
DisGeNETHIKESHI
MedgenHIKESHI
Genetic Testing Registry HIKESHI
NextProtQ53FT3 [Medical]
TSGene51501
GENETestsHIKESHI
Target ValidationHIKESHI
Huge Navigator HIKESHI [HugePedia]
snp3D : Map Gene to Disease51501
BioCentury BCIQHIKESHI
ClinGenHIKESHI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51501
Chemical/Pharm GKB GenePA144596492
Clinical trialHIKESHI
Miscellaneous
canSAR (ICR)HIKESHI (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIKESHI
EVEXHIKESHI
GoPubMedHIKESHI
iHOPHIKESHI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:23:32 CET 2017

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