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HILS1 (histone linker H1 domain, spermatid-specific 1 (pseudogene))

Identity

Alias_nameshistone linker H1 domain, spermatid-specific 1
Other aliasH1.9
HGNC (Hugo) HILS1
LocusID (NCBI) 373861
Atlas_Id 64271
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50171446 and ends at 50172476 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HILS1   30616
Cards
Entrez_Gene (NCBI)HILS1  373861  histone linker H1 domain, spermatid-specific 1 (pseudogene)
AliasesH1.9
GeneCards (Weizmann)HILS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:50171446-50172476 [Contig_View]  HILS1 [Vega]
TCGA cBioPortalHILS1
AceView (NCBI)HILS1
Genatlas (Paris)HILS1
WikiGenes373861
SOURCE (Princeton)HILS1
Genetics Home Reference (NIH)HILS1
Genomic and cartography
GoldenPath hg38 (UCSC)HILS1  -     chr17:50171446-50172476 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HILS1  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblHILS1 - 17q21.33 [CytoView hg19]  HILS1 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIHILS1 [Mapview hg19]  HILS1 [Mapview hg38]
OMIM608101   
Gene and transcription
Genbank (Entrez)AY286318 BC033456 BC048250 BC109047 BC109048
RefSeq transcript (Entrez)NM_194072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HILS1
Cluster EST : UnigeneHs.25934 [ NCBI ]
CGAP (NCI)Hs.25934
Gene ExpressionHILS1 [ NCBI-GEO ]   HILS1 [ EBI - ARRAY_EXPRESS ]   HILS1 [ SEEK ]   HILS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HILS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)373861
GTEX Portal (Tissue expression)HILS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60008   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60008  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60008
Splice isoforms : SwissVarP60008
PhosPhoSitePlusP60008
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Conserved Domain (NCBI)HILS1
DMDM Disease mutations373861
Blocks (Seattle)HILS1
SuperfamilyP60008
Peptide AtlasP60008
HPRD12164
IPIIPI00375521   
Protein Interaction databases
DIP (DOE-UCLA)P60008
IntAct (EBI)P60008
BioGRIDHILS1
STRING (EMBL)HILS1
ZODIACHILS1
Ontologies - Pathways
QuickGOP60008
Ontology : AmiGOnucleosome  male germ cell nucleus  nucleic acid binding  DNA binding  nucleosome assembly  chromatin remodeling  chromatin silencing  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  germ cell development  spermatogenesis  covalent chromatin modification  chromosome condensation  histone binding  
Ontology : EGO-EBInucleosome  male germ cell nucleus  nucleic acid binding  DNA binding  nucleosome assembly  chromatin remodeling  chromatin silencing  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  germ cell development  spermatogenesis  covalent chromatin modification  chromosome condensation  histone binding  
NDEx NetworkHILS1
Atlas of Cancer Signalling NetworkHILS1
Wikipedia pathwaysHILS1
Orthology - Evolution
OrthoDB373861
Phylogenetic Trees/Animal Genes : TreeFamHILS1
HOVERGENP60008
HOGENOMP60008
Homologs : HomoloGeneHILS1
Homology/Alignments : Family Browser (UCSC)HILS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHILS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HILS1
dbVarHILS1
ClinVarHILS1
1000_GenomesHILS1 
Exome Variant ServerHILS1
ExAC (Exome Aggregation Consortium)HILS1 (select the gene name)
Genetic variants : HAPMAP373861
Genomic Variants (DGV)HILS1 [DGVbeta]
DECIPHERHILS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHILS1 
Mutations
ICGC Data PortalHILS1 
TCGA Data PortalHILS1 
Broad Tumor PortalHILS1
OASIS PortalHILS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHILS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HILS1
DgiDB (Drug Gene Interaction Database)HILS1
DoCM (Curated mutations)HILS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HILS1 (select a term)
intoGenHILS1
Cancer3DHILS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608101   
Orphanet
MedgenHILS1
Genetic Testing Registry HILS1
NextProtP60008 [Medical]
TSGene373861
GENETestsHILS1
Huge Navigator HILS1 [HugePedia]
snp3D : Map Gene to Disease373861
BioCentury BCIQHILS1
ClinGenHILS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD373861
Chemical/Pharm GKB GenePA142671687
Clinical trialHILS1
Miscellaneous
canSAR (ICR)HILS1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHILS1
EVEXHILS1
GoPubMedHILS1
iHOPHILS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:15:33 CEST 2017

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