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HINFP (histone H4 transcription factor)

Identity

Alias_namesMIZF
MBD2-interacting zinc finger 1
MBD2-interacting zinc finger
Alias_symbol (synonym)DKFZP434F162
HiNF-P
ZNF743
Other alias
HGNC (Hugo) HINFP
LocusID (NCBI) 25988
Atlas_Id 45595
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118992233 and ends at 119005765 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HINFP   17850
Cards
Entrez_Gene (NCBI)HINFP  25988  histone H4 transcription factor
AliasesHiNF-P; MIZF; ZNF743
GeneCards (Weizmann)HINFP
Ensembl hg19 (Hinxton)ENSG00000172273 [Gene_View]  chr11:118992233-119005765 [Contig_View]  HINFP [Vega]
Ensembl hg38 (Hinxton)ENSG00000172273 [Gene_View]  chr11:118992233-119005765 [Contig_View]  HINFP [Vega]
ICGC DataPortalENSG00000172273
TCGA cBioPortalHINFP
AceView (NCBI)HINFP
Genatlas (Paris)HINFP
WikiGenes25988
SOURCE (Princeton)HINFP
Genetics Home Reference (NIH)HINFP
Genomic and cartography
GoldenPath hg19 (UCSC)HINFP  -     chr11:118992233-119005765 +  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HINFP  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblHINFP - 11q23.3 [CytoView hg19]  HINFP - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIHINFP [Mapview hg19]  HINFP [Mapview hg38]
OMIM607099   
Gene and transcription
Genbank (Entrez)AK056362 AK092869 AK300288 AK301452 AL080201
RefSeq transcript (Entrez)NM_001243259 NM_015517 NM_198971
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)HINFP
Cluster EST : UnigeneHs.504091 [ NCBI ]
CGAP (NCI)Hs.504091
Alternative Splicing GalleryENSG00000172273
Gene ExpressionHINFP [ NCBI-GEO ]   HINFP [ EBI - ARRAY_EXPRESS ]   HINFP [ SEEK ]   HINFP [ MEM ]
Gene Expression Viewer (FireBrowse)HINFP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25988
GTEX Portal (Tissue expression)HINFP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQA5
Splice isoforms : SwissVarQ9BQA5
PhosPhoSitePlusQ9BQA5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)HINFP
DMDM Disease mutations25988
Blocks (Seattle)HINFP
SuperfamilyQ9BQA5
Human Protein AtlasENSG00000172273
Peptide AtlasQ9BQA5
HPRD07387
IPIIPI00023489   IPI00911084   IPI00984942   IPI00984317   IPI00985033   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQA5
IntAct (EBI)Q9BQA5
FunCoupENSG00000172273
BioGRIDHINFP
STRING (EMBL)HINFP
ZODIACHINFP
Ontologies - Pathways
QuickGOQ9BQA5
Ontology : AmiGODNA damage checkpoint  G1/S transition of mitotic cell cycle  regulation of transcription involved in G1/S transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  in utero embryonic development  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  nucleolus  DNA repair  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of gene expression  positive regulation of gene expression  negative regulation of gene expression  Cajal body  enzyme binding  histone binding  transcription regulatory region DNA binding  establishment of protein localization  myoblast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA damage checkpoint  G1/S transition of mitotic cell cycle  regulation of transcription involved in G1/S transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  in utero embryonic development  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  nucleolus  DNA repair  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of gene expression  positive regulation of gene expression  negative regulation of gene expression  Cajal body  enzyme binding  histone binding  transcription regulatory region DNA binding  establishment of protein localization  myoblast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkHINFP
Atlas of Cancer Signalling NetworkHINFP
Wikipedia pathwaysHINFP
Orthology - Evolution
OrthoDB25988
GeneTree (enSembl)ENSG00000172273
Phylogenetic Trees/Animal Genes : TreeFamHINFP
HOVERGENQ9BQA5
HOGENOMQ9BQA5
Homologs : HomoloGeneHINFP
Homology/Alignments : Family Browser (UCSC)HINFP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHINFP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HINFP
dbVarHINFP
ClinVarHINFP
1000_GenomesHINFP 
Exome Variant ServerHINFP
ExAC (Exome Aggregation Consortium)HINFP (select the gene name)
Genetic variants : HAPMAP25988
Genomic Variants (DGV)HINFP [DGVbeta]
DECIPHER (Syndromes)11:118992233-119005765  ENSG00000172273
CONAN: Copy Number AnalysisHINFP 
Mutations
ICGC Data PortalHINFP 
TCGA Data PortalHINFP 
Broad Tumor PortalHINFP
OASIS PortalHINFP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHINFP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHINFP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HINFP
DgiDB (Drug Gene Interaction Database)HINFP
DoCM (Curated mutations)HINFP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HINFP (select a term)
intoGenHINFP
Cancer3DHINFP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607099   
Orphanet
MedgenHINFP
Genetic Testing Registry HINFP
NextProtQ9BQA5 [Medical]
TSGene25988
GENETestsHINFP
Huge Navigator HINFP [HugePedia]
snp3D : Map Gene to Disease25988
BioCentury BCIQHINFP
ClinGenHINFP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25988
Chemical/Pharm GKB GenePA164720597
Clinical trialHINFP
Miscellaneous
canSAR (ICR)HINFP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHINFP
EVEXHINFP
GoPubMedHINFP
iHOPHINFP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:09:01 CET 2017

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