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HIRIP3 (HIRA interacting protein 3)

Identity

Alias_namesHIRA-interacting protein 3
Other alias-
HGNC (Hugo) HIRIP3
LocusID (NCBI) 8479
Atlas_Id 64274
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29992321 and ends at 29996096 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIRIP3   4917
Cards
Entrez_Gene (NCBI)HIRIP3  8479  HIRA interacting protein 3
Aliases
GeneCards (Weizmann)HIRIP3
Ensembl hg19 (Hinxton)ENSG00000149929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149929 [Gene_View]  chr16:29992321-29996096 [Contig_View]  HIRIP3 [Vega]
ICGC DataPortalENSG00000149929
TCGA cBioPortalHIRIP3
AceView (NCBI)HIRIP3
Genatlas (Paris)HIRIP3
WikiGenes8479
SOURCE (Princeton)HIRIP3
Genetics Home Reference (NIH)HIRIP3
Genomic and cartography
GoldenPath hg38 (UCSC)HIRIP3  -     chr16:29992321-29996096 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIRIP3  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblHIRIP3 - 16p11.2 [CytoView hg19]  HIRIP3 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIHIRIP3 [Mapview hg19]  HIRIP3 [Mapview hg38]
OMIM603365   
Gene and transcription
Genbank (Entrez)AJ223349 AJ223350 AJ223351 AK075145 AK312504
RefSeq transcript (Entrez)NM_001197323 NM_003609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIRIP3
Cluster EST : UnigeneHs.567370 [ NCBI ]
CGAP (NCI)Hs.567370
Alternative Splicing GalleryENSG00000149929
Gene ExpressionHIRIP3 [ NCBI-GEO ]   HIRIP3 [ EBI - ARRAY_EXPRESS ]   HIRIP3 [ SEEK ]   HIRIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)HIRIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8479
GTEX Portal (Tissue expression)HIRIP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW71
Splice isoforms : SwissVarQ9BW71
PhosPhoSitePlusQ9BW71
Domains : Interpro (EBI)Histone_chaperone_domain_CHZ   
Domain families : Pfam (Sanger)CHZ (PF09649)   
Domain families : Pfam (NCBI)pfam09649   
Domain families : Smart (EMBL)CHZ (SM01082)  
Conserved Domain (NCBI)HIRIP3
DMDM Disease mutations8479
Blocks (Seattle)HIRIP3
SuperfamilyQ9BW71
Human Protein AtlasENSG00000149929
Peptide AtlasQ9BW71
HPRD04531
IPIIPI00304875   IPI00413871   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW71
IntAct (EBI)Q9BW71
FunCoupENSG00000149929
BioGRIDHIRIP3
STRING (EMBL)HIRIP3
ZODIACHIRIP3
Ontologies - Pathways
QuickGOQ9BW71
Ontology : AmiGOprotein binding  nucleus  nucleolus  chromatin assembly or disassembly  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  chromatin assembly or disassembly  
NDEx NetworkHIRIP3
Atlas of Cancer Signalling NetworkHIRIP3
Wikipedia pathwaysHIRIP3
Orthology - Evolution
OrthoDB8479
GeneTree (enSembl)ENSG00000149929
Phylogenetic Trees/Animal Genes : TreeFamHIRIP3
HOVERGENQ9BW71
HOGENOMQ9BW71
Homologs : HomoloGeneHIRIP3
Homology/Alignments : Family Browser (UCSC)HIRIP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIRIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIRIP3
dbVarHIRIP3
ClinVarHIRIP3
1000_GenomesHIRIP3 
Exome Variant ServerHIRIP3
ExAC (Exome Aggregation Consortium)HIRIP3 (select the gene name)
Genetic variants : HAPMAP8479
Genomic Variants (DGV)HIRIP3 [DGVbeta]
DECIPHERHIRIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIRIP3 
Mutations
ICGC Data PortalHIRIP3 
TCGA Data PortalHIRIP3 
Broad Tumor PortalHIRIP3
OASIS PortalHIRIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIRIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIRIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIRIP3
DgiDB (Drug Gene Interaction Database)HIRIP3
DoCM (Curated mutations)HIRIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIRIP3 (select a term)
intoGenHIRIP3
Cancer3DHIRIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603365   
Orphanet
MedgenHIRIP3
Genetic Testing Registry HIRIP3
NextProtQ9BW71 [Medical]
TSGene8479
GENETestsHIRIP3
Target ValidationHIRIP3
Huge Navigator HIRIP3 [HugePedia]
snp3D : Map Gene to Disease8479
BioCentury BCIQHIRIP3
ClinGenHIRIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8479
Chemical/Pharm GKB GenePA29294
Clinical trialHIRIP3
Miscellaneous
canSAR (ICR)HIRIP3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIRIP3
EVEXHIRIP3
GoPubMedHIRIP3
iHOPHIRIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:17:09 CEST 2017

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