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HIST1H1C (histone cluster 1 H1 family member c)

Identity

Alias_namesH1F2
H1 histone family, member 2
histone 1, H1c
histone cluster 1, H1c
Alias_symbol (synonym)H1.2
H1s-1
H1c
Other aliasH1C
HGNC (Hugo) HIST1H1C
LocusID (NCBI) 3006
Atlas_Id 53900
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26055740 and ends at 26056471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPS16 (19q13.2) / HIST1H1C (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H1C   4716
Cards
Entrez_Gene (NCBI)HIST1H1C  3006  histone cluster 1 H1 family member c
AliasesH1.2; H1C; H1F2; H1s-1
GeneCards (Weizmann)HIST1H1C
Ensembl hg19 (Hinxton)ENSG00000187837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187837 [Gene_View]  ENSG00000187837 [Sequence]  chr6:26055740-26056471 [Contig_View]  HIST1H1C [Vega]
ICGC DataPortalENSG00000187837
TCGA cBioPortalHIST1H1C
AceView (NCBI)HIST1H1C
Genatlas (Paris)HIST1H1C
WikiGenes3006
SOURCE (Princeton)HIST1H1C
Genetics Home Reference (NIH)HIST1H1C
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H1C  -     chr6:26055740-26056471 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H1C  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H1C - 6p22.2 [CytoView hg19]  HIST1H1C - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H1C [Mapview hg19]  HIST1H1C [Mapview hg38]
OMIM142710   
Gene and transcription
Genbank (Entrez)AB451259 AB451385 AK290947 BC002649 D28457
RefSeq transcript (Entrez)NM_005319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H1C
Cluster EST : UnigeneHs.7644 [ NCBI ]
CGAP (NCI)Hs.7644
Alternative Splicing GalleryENSG00000187837
Gene ExpressionHIST1H1C [ NCBI-GEO ]   HIST1H1C [ EBI - ARRAY_EXPRESS ]   HIST1H1C [ SEEK ]   HIST1H1C [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3006
GTEX Portal (Tissue expression)HIST1H1C
Human Protein AtlasENSG00000187837-HIST1H1C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16403   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16403  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16403
Splice isoforms : SwissVarP16403
PhosPhoSitePlusP16403
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    Histone_H5    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)HIST1H1C
DMDM Disease mutations3006
Blocks (Seattle)HIST1H1C
SuperfamilyP16403
Human Protein Atlas [tissue]ENSG00000187837-HIST1H1C [tissue]
Peptide AtlasP16403
HPRD07514
IPIIPI00217465   
Protein Interaction databases
DIP (DOE-UCLA)P16403
IntAct (EBI)P16403
FunCoupENSG00000187837
BioGRIDHIST1H1C
STRING (EMBL)HIST1H1C
ZODIACHIST1H1C
Ontologies - Pathways
QuickGOP16403
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  nucleosome  RNA binding  protein binding  nucleus  nuclear euchromatin  nucleosome assembly  nucleosome positioning  chromatin DNA binding  transcriptionally active chromatin  histone H3-K4 trimethylation  histone H3-K27 trimethylation  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  nucleosome  RNA binding  protein binding  nucleus  nuclear euchromatin  nucleosome assembly  nucleosome positioning  chromatin DNA binding  transcriptionally active chromatin  histone H3-K4 trimethylation  histone H3-K27 trimethylation  
NDEx NetworkHIST1H1C
Atlas of Cancer Signalling NetworkHIST1H1C
Wikipedia pathwaysHIST1H1C
Orthology - Evolution
OrthoDB3006
GeneTree (enSembl)ENSG00000187837
Phylogenetic Trees/Animal Genes : TreeFamHIST1H1C
HOVERGENP16403
HOGENOMP16403
Homologs : HomoloGeneHIST1H1C
Homology/Alignments : Family Browser (UCSC)HIST1H1C
Gene fusions - Rearrangements
Fusion : QuiverHIST1H1C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H1C
dbVarHIST1H1C
ClinVarHIST1H1C
1000_GenomesHIST1H1C 
Exome Variant ServerHIST1H1C
ExAC (Exome Aggregation Consortium)ENSG00000187837
GNOMAD BrowserENSG00000187837
Genetic variants : HAPMAP3006
Genomic Variants (DGV)HIST1H1C [DGVbeta]
DECIPHERHIST1H1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H1C 
Mutations
ICGC Data PortalHIST1H1C 
TCGA Data PortalHIST1H1C 
Broad Tumor PortalHIST1H1C
OASIS PortalHIST1H1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H1C
DgiDB (Drug Gene Interaction Database)HIST1H1C
DoCM (Curated mutations)HIST1H1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H1C (select a term)
intoGenHIST1H1C
Cancer3DHIST1H1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142710   
Orphanet
DisGeNETHIST1H1C
MedgenHIST1H1C
Genetic Testing Registry HIST1H1C
NextProtP16403 [Medical]
TSGene3006
GENETestsHIST1H1C
Target ValidationHIST1H1C
Huge Navigator HIST1H1C [HugePedia]
snp3D : Map Gene to Disease3006
BioCentury BCIQHIST1H1C
ClinGenHIST1H1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3006
Chemical/Pharm GKB GenePA29094
Clinical trialHIST1H1C
Miscellaneous
canSAR (ICR)HIST1H1C (select the gene name)
Probes
Litterature
PubMed92 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H1C
EVEXHIST1H1C
GoPubMedHIST1H1C
iHOPHIST1H1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:29:00 CEST 2018

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