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HIST1H1D (histone cluster 1 H1 family member d)

Identity

Alias_namesH1F3
H1 histone family, member 3
histone 1, H1d
histone cluster 1, H1d
Alias_symbol (synonym)H1.3
H1d
H1s-2
Other aliasH1D
HGNC (Hugo) HIST1H1D
LocusID (NCBI) 3007
Atlas_Id 53901
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26234212 and ends at 26234988 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H1D (6p22.2) / HSPA8 (11q24.1)HIST1H1D (6p22.2) / METTL23 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H1D   4717
Cards
Entrez_Gene (NCBI)HIST1H1D  3007  histone cluster 1 H1 family member d
AliasesH1.3; H1D; H1F3; H1s-2
GeneCards (Weizmann)HIST1H1D
Ensembl hg19 (Hinxton)ENSG00000124575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124575 [Gene_View]  ENSG00000124575 [Sequence]  chr6:26234212-26234988 [Contig_View]  HIST1H1D [Vega]
ICGC DataPortalENSG00000124575
TCGA cBioPortalHIST1H1D
AceView (NCBI)HIST1H1D
Genatlas (Paris)HIST1H1D
WikiGenes3007
SOURCE (Princeton)HIST1H1D
Genetics Home Reference (NIH)HIST1H1D
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H1D  -     chr6:26234212-26234988 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H1D  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H1D - 6p22.2 [CytoView hg19]  HIST1H1D - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H1D [Mapview hg19]  HIST1H1D [Mapview hg38]
OMIM142210   
Gene and transcription
Genbank (Entrez)AK312845 BC104874 BC111971
RefSeq transcript (Entrez)NM_005320
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H1D
Cluster EST : UnigeneHs.136857 [ NCBI ]
CGAP (NCI)Hs.136857
Alternative Splicing GalleryENSG00000124575
Gene ExpressionHIST1H1D [ NCBI-GEO ]   HIST1H1D [ EBI - ARRAY_EXPRESS ]   HIST1H1D [ SEEK ]   HIST1H1D [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3007
GTEX Portal (Tissue expression)HIST1H1D
Human Protein AtlasENSG00000124575-HIST1H1D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16402
Splice isoforms : SwissVarP16402
PhosPhoSitePlusP16402
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    Histone_H5    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)HIST1H1D
DMDM Disease mutations3007
Blocks (Seattle)HIST1H1D
SuperfamilyP16402
Human Protein Atlas [tissue]ENSG00000124575-HIST1H1D [tissue]
Peptide AtlasP16402
HPRD06764
IPIIPI00217466   
Protein Interaction databases
DIP (DOE-UCLA)P16402
IntAct (EBI)P16402
FunCoupENSG00000124575
BioGRIDHIST1H1D
STRING (EMBL)HIST1H1D
ZODIACHIST1H1D
Ontologies - Pathways
QuickGOP16402
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  nucleosome  nuclear chromatin  RNA binding  nuclear euchromatin  nucleosome assembly  nucleosome positioning  chromatin DNA binding  histone H3-K4 trimethylation  histone H3-K27 trimethylation  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  nucleosome  nuclear chromatin  RNA binding  nuclear euchromatin  nucleosome assembly  nucleosome positioning  chromatin DNA binding  histone H3-K4 trimethylation  histone H3-K27 trimethylation  
NDEx NetworkHIST1H1D
Atlas of Cancer Signalling NetworkHIST1H1D
Wikipedia pathwaysHIST1H1D
Orthology - Evolution
OrthoDB3007
GeneTree (enSembl)ENSG00000124575
Phylogenetic Trees/Animal Genes : TreeFamHIST1H1D
HOVERGENP16402
HOGENOMP16402
Homologs : HomoloGeneHIST1H1D
Homology/Alignments : Family Browser (UCSC)HIST1H1D
Gene fusions - Rearrangements
Fusion : QuiverHIST1H1D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H1D
dbVarHIST1H1D
ClinVarHIST1H1D
1000_GenomesHIST1H1D 
Exome Variant ServerHIST1H1D
ExAC (Exome Aggregation Consortium)ENSG00000124575
GNOMAD BrowserENSG00000124575
Varsome BrowserHIST1H1D
Genetic variants : HAPMAP3007
Genomic Variants (DGV)HIST1H1D [DGVbeta]
DECIPHERHIST1H1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H1D 
Mutations
ICGC Data PortalHIST1H1D 
TCGA Data PortalHIST1H1D 
Broad Tumor PortalHIST1H1D
OASIS PortalHIST1H1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H1D
DgiDB (Drug Gene Interaction Database)HIST1H1D
DoCM (Curated mutations)HIST1H1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H1D (select a term)
intoGenHIST1H1D
Cancer3DHIST1H1D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142210   
Orphanet
DisGeNETHIST1H1D
MedgenHIST1H1D
Genetic Testing Registry HIST1H1D
NextProtP16402 [Medical]
TSGene3007
GENETestsHIST1H1D
Target ValidationHIST1H1D
Huge Navigator HIST1H1D [HugePedia]
snp3D : Map Gene to Disease3007
BioCentury BCIQHIST1H1D
ClinGenHIST1H1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3007
Chemical/Pharm GKB GenePA29095
Clinical trialHIST1H1D
Miscellaneous
canSAR (ICR)HIST1H1D (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H1D
EVEXHIST1H1D
GoPubMedHIST1H1D
iHOPHIST1H1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:26:56 CEST 2018

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