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HIST1H1T (histone cluster 1 H1 family member t)

Identity

Alias_namesH1FT
H1 histone family, member T (testis-specific)
histone 1, H1t
histone cluster 1, H1t
Alias_symbol (synonym)H1t
Other aliasH1.6
dJ221C16.2
HGNC (Hugo) HIST1H1T
LocusID (NCBI) 3010
Atlas_Id 64275
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26107412 and ends at 26108136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H1T   4720
Cards
Entrez_Gene (NCBI)HIST1H1T  3010  histone cluster 1 H1 family member t
AliasesH1.6; H1FT; H1t; dJ221C16.2
GeneCards (Weizmann)HIST1H1T
Ensembl hg19 (Hinxton)ENSG00000187475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187475 [Gene_View]  ENSG00000187475 [Sequence]  chr6:26107412-26108136 [Contig_View]  HIST1H1T [Vega]
ICGC DataPortalENSG00000187475
TCGA cBioPortalHIST1H1T
AceView (NCBI)HIST1H1T
Genatlas (Paris)HIST1H1T
WikiGenes3010
SOURCE (Princeton)HIST1H1T
Genetics Home Reference (NIH)HIST1H1T
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H1T  -     chr6:26107412-26108136 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H1T  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H1T - 6p22.2 [CytoView hg19]  HIST1H1T - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H1T [Mapview hg19]  HIST1H1T [Mapview hg38]
OMIM142712   
Gene and transcription
Genbank (Entrez)BC069517 BC130350 EU446962 HQ258096
RefSeq transcript (Entrez)NM_005323
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H1T
Cluster EST : UnigeneHs.533293 [ NCBI ]
CGAP (NCI)Hs.533293
Alternative Splicing GalleryENSG00000187475
Gene ExpressionHIST1H1T [ NCBI-GEO ]   HIST1H1T [ EBI - ARRAY_EXPRESS ]   HIST1H1T [ SEEK ]   HIST1H1T [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H1T [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3010
GTEX Portal (Tissue expression)HIST1H1T
Human Protein AtlasENSG00000187475-HIST1H1T [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22492   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22492  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22492
Splice isoforms : SwissVarP22492
PhosPhoSitePlusP22492
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    Histone_H5    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)HIST1H1T
DMDM Disease mutations3010
Blocks (Seattle)HIST1H1T
SuperfamilyP22492
Human Protein Atlas [tissue]ENSG00000187475-HIST1H1T [tissue]
Peptide AtlasP22492
HPRD00822
IPIIPI00419983   
Protein Interaction databases
DIP (DOE-UCLA)P22492
IntAct (EBI)P22492
FunCoupENSG00000187475
BioGRIDHIST1H1T
STRING (EMBL)HIST1H1T
ZODIACHIST1H1T
Ontologies - Pathways
QuickGOP22492
Ontology : AmiGOnucleosome  DNA binding  nucleus  nucleosome assembly  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBInucleosome  DNA binding  nucleus  nucleosome assembly  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkHIST1H1T
Atlas of Cancer Signalling NetworkHIST1H1T
Wikipedia pathwaysHIST1H1T
Orthology - Evolution
OrthoDB3010
GeneTree (enSembl)ENSG00000187475
Phylogenetic Trees/Animal Genes : TreeFamHIST1H1T
HOVERGENP22492
HOGENOMP22492
Homologs : HomoloGeneHIST1H1T
Homology/Alignments : Family Browser (UCSC)HIST1H1T
Gene fusions - Rearrangements
Fusion : QuiverHIST1H1T
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H1T [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H1T
dbVarHIST1H1T
ClinVarHIST1H1T
1000_GenomesHIST1H1T 
Exome Variant ServerHIST1H1T
ExAC (Exome Aggregation Consortium)ENSG00000187475
GNOMAD BrowserENSG00000187475
Varsome BrowserHIST1H1T
Genetic variants : HAPMAP3010
Genomic Variants (DGV)HIST1H1T [DGVbeta]
DECIPHERHIST1H1T [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H1T 
Mutations
ICGC Data PortalHIST1H1T 
TCGA Data PortalHIST1H1T 
Broad Tumor PortalHIST1H1T
OASIS PortalHIST1H1T [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H1T  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H1T
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H1T
DgiDB (Drug Gene Interaction Database)HIST1H1T
DoCM (Curated mutations)HIST1H1T (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H1T (select a term)
intoGenHIST1H1T
Cancer3DHIST1H1T(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142712   
Orphanet
DisGeNETHIST1H1T
MedgenHIST1H1T
Genetic Testing Registry HIST1H1T
NextProtP22492 [Medical]
TSGene3010
GENETestsHIST1H1T
Target ValidationHIST1H1T
Huge Navigator HIST1H1T [HugePedia]
snp3D : Map Gene to Disease3010
BioCentury BCIQHIST1H1T
ClinGenHIST1H1T
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3010
Chemical/Pharm GKB GenePA29098
Clinical trialHIST1H1T
Miscellaneous
canSAR (ICR)HIST1H1T (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H1T
EVEXHIST1H1T
GoPubMedHIST1H1T
iHOPHIST1H1T
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:53 CEST 2018

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