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HIST1H2AA (histone cluster 1 H2A family member a)

Identity

Alias_namesH2A histone family, member R
histone 1, H2aa
histone cluster 1, H2aa
Alias_symbol (synonym)bA317E16.2
H2AFR
Other aliasH2AA
TH2A
HGNC (Hugo) HIST1H2AA
LocusID (NCBI) 221613
Atlas_Id 64276
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25726063 and ends at 25726562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AA   18729
Cards
Entrez_Gene (NCBI)HIST1H2AA  221613  histone cluster 1 H2A family member a
AliasesH2AA; H2AFR; TH2A; bA317E16.2
GeneCards (Weizmann)HIST1H2AA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:25726063-25726562 [Contig_View]  HIST1H2AA [Vega]
TCGA cBioPortalHIST1H2AA
AceView (NCBI)HIST1H2AA
Genatlas (Paris)HIST1H2AA
WikiGenes221613
SOURCE (Princeton)HIST1H2AA
Genetics Home Reference (NIH)HIST1H2AA
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AA  -     chr6:25726063-25726562 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AA  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AA - 6p22.2 [CytoView hg19]  HIST1H2AA - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AA [Mapview hg19]  HIST1H2AA [Mapview hg38]
OMIM613499   
Gene and transcription
Genbank (Entrez)BC062211 HQ447550
RefSeq transcript (Entrez)NM_170745
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AA
Cluster EST : UnigeneHs.406739 [ NCBI ]
CGAP (NCI)Hs.406739
Gene ExpressionHIST1H2AA [ NCBI-GEO ]   HIST1H2AA [ EBI - ARRAY_EXPRESS ]   HIST1H2AA [ SEEK ]   HIST1H2AA [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221613
GTEX Portal (Tissue expression)HIST1H2AA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QV6
Splice isoforms : SwissVarQ96QV6
PhosPhoSitePlusQ96QV6
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AA
DMDM Disease mutations221613
Blocks (Seattle)HIST1H2AA
SuperfamilyQ96QV6
Peptide AtlasQ96QV6
HPRD13653
IPIIPI00045109   
Protein Interaction databases
DIP (DOE-UCLA)Q96QV6
IntAct (EBI)Q96QV6
BioGRIDHIST1H2AA
STRING (EMBL)HIST1H2AA
ZODIACHIST1H2AA
Ontologies - Pathways
QuickGOQ96QV6
Ontology : AmiGOnuclear chromosome, telomeric region  nucleosome  nuclear chromatin  DNA binding  nucleus  chromatin silencing  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInuclear chromosome, telomeric region  nucleosome  nuclear chromatin  DNA binding  nucleus  chromatin silencing  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2AA
Atlas of Cancer Signalling NetworkHIST1H2AA
Wikipedia pathwaysHIST1H2AA
Orthology - Evolution
OrthoDB221613
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AA
HOVERGENQ96QV6
HOGENOMQ96QV6
Homologs : HomoloGeneHIST1H2AA
Homology/Alignments : Family Browser (UCSC)HIST1H2AA
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AA
dbVarHIST1H2AA
ClinVarHIST1H2AA
1000_GenomesHIST1H2AA 
Exome Variant ServerHIST1H2AA
Genetic variants : HAPMAP221613
Genomic Variants (DGV)HIST1H2AA [DGVbeta]
DECIPHERHIST1H2AA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AA 
Mutations
ICGC Data PortalHIST1H2AA 
TCGA Data PortalHIST1H2AA 
Broad Tumor PortalHIST1H2AA
OASIS PortalHIST1H2AA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AA
DgiDB (Drug Gene Interaction Database)HIST1H2AA
DoCM (Curated mutations)HIST1H2AA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AA (select a term)
intoGenHIST1H2AA
Cancer3DHIST1H2AA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613499   
Orphanet
DisGeNETHIST1H2AA
MedgenHIST1H2AA
Genetic Testing Registry HIST1H2AA
NextProtQ96QV6 [Medical]
TSGene221613
GENETestsHIST1H2AA
Target ValidationHIST1H2AA
Huge Navigator HIST1H2AA [HugePedia]
snp3D : Map Gene to Disease221613
BioCentury BCIQHIST1H2AA
ClinGenHIST1H2AA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221613
Chemical/Pharm GKB GenePA134988774
Clinical trialHIST1H2AA
Miscellaneous
canSAR (ICR)HIST1H2AA (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AA
EVEXHIST1H2AA
GoPubMedHIST1H2AA
iHOPHIST1H2AA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:16 CET 2018

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