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HIST1H2AD (histone cluster 1 H2A family member d)

Identity

Alias_namesH2AFG
H2A histone family, member G
histone 1, H2ad
histone cluster 1, H2ad
Alias_symbol (synonym)H2A/g
H2A.3
Other alias
HGNC (Hugo) HIST1H2AD
LocusID (NCBI) 3013
Atlas_Id 64278
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26198784 and ends at 26199293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AD   4729
Cards
Entrez_Gene (NCBI)HIST1H2AD  3013  histone cluster 1 H2A family member d
AliasesH2A.3; H2A/g; H2AFG
GeneCards (Weizmann)HIST1H2AD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:26198784-26199293 [Contig_View]  HIST1H2AD [Vega]
TCGA cBioPortalHIST1H2AD
AceView (NCBI)HIST1H2AD
Genatlas (Paris)HIST1H2AD
WikiGenes3013
SOURCE (Princeton)HIST1H2AD
Genetics Home Reference (NIH)HIST1H2AD
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AD  -     chr6:26198784-26199293 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AD  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AD - 6p22.2 [CytoView hg19]  HIST1H2AD - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AD [Mapview hg19]  HIST1H2AD [Mapview hg38]
OMIM602792   
Gene and transcription
Genbank (Entrez)AK312127 BC093807 BC093809 BC128035 CR541970
RefSeq transcript (Entrez)NM_021065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AD
Cluster EST : UnigeneHs.679229 [ NCBI ]
CGAP (NCI)Hs.679229
Gene ExpressionHIST1H2AD [ NCBI-GEO ]   HIST1H2AD [ EBI - ARRAY_EXPRESS ]   HIST1H2AD [ SEEK ]   HIST1H2AD [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3013
GTEX Portal (Tissue expression)HIST1H2AD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20671   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20671  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20671
Splice isoforms : SwissVarP20671
PhosPhoSitePlusP20671
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AD
DMDM Disease mutations3013
Blocks (Seattle)HIST1H2AD
SuperfamilyP20671
Peptide AtlasP20671
HPRD07534
IPIIPI00026272   
Protein Interaction databases
DIP (DOE-UCLA)P20671
IntAct (EBI)P20671
BioGRIDHIST1H2AD
STRING (EMBL)HIST1H2AD
ZODIACHIST1H2AD
Ontologies - Pathways
QuickGOP20671
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2AD
Atlas of Cancer Signalling NetworkHIST1H2AD
Wikipedia pathwaysHIST1H2AD
Orthology - Evolution
OrthoDB3013
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AD
HOVERGENP20671
HOGENOMP20671
Homologs : HomoloGeneHIST1H2AD
Homology/Alignments : Family Browser (UCSC)HIST1H2AD
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AD
dbVarHIST1H2AD
ClinVarHIST1H2AD
1000_GenomesHIST1H2AD 
Exome Variant ServerHIST1H2AD
Varsome BrowserHIST1H2AD
Genetic variants : HAPMAP3013
Genomic Variants (DGV)HIST1H2AD [DGVbeta]
DECIPHERHIST1H2AD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AD 
Mutations
ICGC Data PortalHIST1H2AD 
TCGA Data PortalHIST1H2AD 
Broad Tumor PortalHIST1H2AD
OASIS PortalHIST1H2AD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AD
DgiDB (Drug Gene Interaction Database)HIST1H2AD
DoCM (Curated mutations)HIST1H2AD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AD (select a term)
intoGenHIST1H2AD
Cancer3DHIST1H2AD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602792   
Orphanet
DisGeNETHIST1H2AD
MedgenHIST1H2AD
Genetic Testing Registry HIST1H2AD
NextProtP20671 [Medical]
TSGene3013
GENETestsHIST1H2AD
Target ValidationHIST1H2AD
Huge Navigator HIST1H2AD [HugePedia]
snp3D : Map Gene to Disease3013
BioCentury BCIQHIST1H2AD
ClinGenHIST1H2AD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3013
Chemical/Pharm GKB GenePA29106
Clinical trialHIST1H2AD
Miscellaneous
canSAR (ICR)HIST1H2AD (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AD
EVEXHIST1H2AD
GoPubMedHIST1H2AD
iHOPHIST1H2AD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:54 CEST 2018

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