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HIST1H2AG (histone cluster 1 H2A family member g)

Identity

Alias_namesH2AFP
H2A histone family, member P
histone 1, H2ag
histone cluster 1, H2ag
Alias_symbol (synonym)pH2A/f
H2A/p
H2A.1b
Other aliasH2AG
HGNC (Hugo) HIST1H2AG
LocusID (NCBI) 8969
Atlas_Id 64280
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27133038 and ends at 27133535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AG   4737
Cards
Entrez_Gene (NCBI)HIST1H2AG  8969  histone cluster 1 H2A family member g
AliasesH2A.1b; H2A/p; H2AFP; H2AG; 
pH2A/f
GeneCards (Weizmann)HIST1H2AG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:27133038-27133535 [Contig_View]  HIST1H2AG [Vega]
TCGA cBioPortalHIST1H2AG
AceView (NCBI)HIST1H2AG
Genatlas (Paris)HIST1H2AG
WikiGenes8969
SOURCE (Princeton)HIST1H2AG
Genetics Home Reference (NIH)HIST1H2AG
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AG  -     chr6:27133038-27133535 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AG  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AG - 6p22.1 [CytoView hg19]  HIST1H2AG - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AG [Mapview hg19]  HIST1H2AG [Mapview hg38]
OMIM615012   
Gene and transcription
Genbank (Entrez)AK312124 BC016677 BC067782 DQ891024 DQ894204
RefSeq transcript (Entrez)NM_021064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AG
Cluster EST : UnigeneHs.51011 [ NCBI ]
CGAP (NCI)Hs.51011
Gene ExpressionHIST1H2AG [ NCBI-GEO ]   HIST1H2AG [ EBI - ARRAY_EXPRESS ]   HIST1H2AG [ SEEK ]   HIST1H2AG [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8969
GTEX Portal (Tissue expression)HIST1H2AG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0S8
Splice isoforms : SwissVarP0C0S8
PhosPhoSitePlusP0C0S8
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AG
DMDM Disease mutations8969
Blocks (Seattle)HIST1H2AG
PDB (SRS)4QYL    5KGF   
PDB (PDBSum)4QYL    5KGF   
PDB (IMB)4QYL    5KGF   
PDB (RSDB)4QYL    5KGF   
Structural Biology KnowledgeBase4QYL    5KGF   
SCOP (Structural Classification of Proteins)4QYL    5KGF   
CATH (Classification of proteins structures)4QYL    5KGF   
SuperfamilyP0C0S8
Peptide AtlasP0C0S8
HPRD13654
Protein Interaction databases
DIP (DOE-UCLA)P0C0S8
IntAct (EBI)P0C0S8
BioGRIDHIST1H2AG
STRING (EMBL)HIST1H2AG
ZODIACHIST1H2AG
Ontologies - Pathways
QuickGOP0C0S8
Ontology : AmiGOnucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  chromatin silencing  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  chromatin silencing  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2AG
Atlas of Cancer Signalling NetworkHIST1H2AG
Wikipedia pathwaysHIST1H2AG
Orthology - Evolution
OrthoDB8969
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AG
HOVERGENP0C0S8
HOGENOMP0C0S8
Homologs : HomoloGeneHIST1H2AG
Homology/Alignments : Family Browser (UCSC)HIST1H2AG
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AG
dbVarHIST1H2AG
ClinVarHIST1H2AG
1000_GenomesHIST1H2AG 
Exome Variant ServerHIST1H2AG
Genetic variants : HAPMAP8969
Genomic Variants (DGV)HIST1H2AG [DGVbeta]
DECIPHERHIST1H2AG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AG 
Mutations
ICGC Data PortalHIST1H2AG 
TCGA Data PortalHIST1H2AG 
Broad Tumor PortalHIST1H2AG
OASIS PortalHIST1H2AG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AG
DgiDB (Drug Gene Interaction Database)HIST1H2AG
DoCM (Curated mutations)HIST1H2AG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AG (select a term)
intoGenHIST1H2AG
Cancer3DHIST1H2AG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615012   
Orphanet
DisGeNETHIST1H2AG
MedgenHIST1H2AG
Genetic Testing Registry HIST1H2AG
NextProtP0C0S8 [Medical]
TSGene8969
GENETestsHIST1H2AG
Target ValidationHIST1H2AG
Huge Navigator HIST1H2AG [HugePedia]
snp3D : Map Gene to Disease8969
BioCentury BCIQHIST1H2AG
ClinGenHIST1H2AG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8969
Chemical/Pharm GKB GenePA29114
Clinical trialHIST1H2AG
Miscellaneous
canSAR (ICR)HIST1H2AG (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AG
EVEXHIST1H2AG
GoPubMedHIST1H2AG
iHOPHIST1H2AG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:16 CET 2018

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