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HIST1H2AH (histone cluster 1 H2A family member h)

Identity

Alias_nameshistone 1, H2ah
histone cluster 1, H2ah
Alias_symbol (synonym)H2AFALii
dJ86C11.1
H2A/S
Other aliasH2AH
HGNC (Hugo) HIST1H2AH
LocusID (NCBI) 85235
Atlas_Id 64281
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27147082 and ends at 27147562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2AH (6p22.1) / DKK3 (11p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AH   13671
Cards
Entrez_Gene (NCBI)HIST1H2AH  85235  histone cluster 1 H2A family member h
AliasesH2A/S; H2AFALii; H2AH; dJ86C11.1
GeneCards (Weizmann)HIST1H2AH
Ensembl hg19 (Hinxton)ENSG00000274997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274997 [Gene_View]  ENSG00000274997 [Sequence]  chr6:27147082-27147562 [Contig_View]  HIST1H2AH [Vega]
ICGC DataPortalENSG00000274997
TCGA cBioPortalHIST1H2AH
AceView (NCBI)HIST1H2AH
Genatlas (Paris)HIST1H2AH
WikiGenes85235
SOURCE (Princeton)HIST1H2AH
Genetics Home Reference (NIH)HIST1H2AH
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AH  -     chr6:27147082-27147562 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AH  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AH - 6p22.1 [CytoView hg19]  HIST1H2AH - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AH [Mapview hg19]  HIST1H2AH [Mapview hg38]
OMIM615013   
Gene and transcription
Genbank (Entrez)AK312232 BC093849 BC093851 BC134366 BC141469
RefSeq transcript (Entrez)NM_080596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AH
Cluster EST : UnigeneHs.352225 [ NCBI ]
CGAP (NCI)Hs.352225
Alternative Splicing GalleryENSG00000274997
Gene ExpressionHIST1H2AH [ NCBI-GEO ]   HIST1H2AH [ EBI - ARRAY_EXPRESS ]   HIST1H2AH [ SEEK ]   HIST1H2AH [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85235
GTEX Portal (Tissue expression)HIST1H2AH
Human Protein AtlasENSG00000274997-HIST1H2AH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KK5
Splice isoforms : SwissVarQ96KK5
PhosPhoSitePlusQ96KK5
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AH
DMDM Disease mutations85235
Blocks (Seattle)HIST1H2AH
SuperfamilyQ96KK5
Human Protein Atlas [tissue]ENSG00000274997-HIST1H2AH [tissue]
Peptide AtlasQ96KK5
HPRD13655
IPIIPI00081836   
Protein Interaction databases
DIP (DOE-UCLA)Q96KK5
IntAct (EBI)Q96KK5
FunCoupENSG00000274997
BioGRIDHIST1H2AH
STRING (EMBL)HIST1H2AH
ZODIACHIST1H2AH
Ontologies - Pathways
QuickGOQ96KK5
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2AH
Atlas of Cancer Signalling NetworkHIST1H2AH
Wikipedia pathwaysHIST1H2AH
Orthology - Evolution
OrthoDB85235
GeneTree (enSembl)ENSG00000274997
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AH
HOVERGENQ96KK5
HOGENOMQ96KK5
Homologs : HomoloGeneHIST1H2AH
Homology/Alignments : Family Browser (UCSC)HIST1H2AH
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AH
dbVarHIST1H2AH
ClinVarHIST1H2AH
1000_GenomesHIST1H2AH 
Exome Variant ServerHIST1H2AH
ExAC (Exome Aggregation Consortium)ENSG00000274997
GNOMAD BrowserENSG00000274997
Varsome BrowserHIST1H2AH
Genetic variants : HAPMAP85235
Genomic Variants (DGV)HIST1H2AH [DGVbeta]
DECIPHERHIST1H2AH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AH 
Mutations
ICGC Data PortalHIST1H2AH 
TCGA Data PortalHIST1H2AH 
Broad Tumor PortalHIST1H2AH
OASIS PortalHIST1H2AH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AH
DgiDB (Drug Gene Interaction Database)HIST1H2AH
DoCM (Curated mutations)HIST1H2AH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AH (select a term)
intoGenHIST1H2AH
Cancer3DHIST1H2AH(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615013   
Orphanet
DisGeNETHIST1H2AH
MedgenHIST1H2AH
Genetic Testing Registry HIST1H2AH
NextProtQ96KK5 [Medical]
TSGene85235
GENETestsHIST1H2AH
Target ValidationHIST1H2AH
Huge Navigator HIST1H2AH [HugePedia]
snp3D : Map Gene to Disease85235
BioCentury BCIQHIST1H2AH
ClinGenHIST1H2AH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85235
Chemical/Pharm GKB GenePA134913416
Clinical trialHIST1H2AH
Miscellaneous
canSAR (ICR)HIST1H2AH (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AH
EVEXHIST1H2AH
GoPubMedHIST1H2AH
iHOPHIST1H2AH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:54 CEST 2018

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