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HIST1H2AI (histone cluster 1 H2A family member i)

Identity

Alias_namesH2AFC
H2A histone family, member C
histone 1, H2ai
histone cluster 1, H2ai
Alias_symbol (synonym)H2A/c
Other alias
HGNC (Hugo) HIST1H2AI
LocusID (NCBI) 8329
Atlas_Id 64282
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27808199 and ends at 27808667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AI   4725
Cards
Entrez_Gene (NCBI)HIST1H2AI  8329  histone cluster 1 H2A family member i
AliasesH2A/c; H2AFC
GeneCards (Weizmann)HIST1H2AI
Ensembl hg19 (Hinxton)ENSG00000196747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196747 [Gene_View]  ENSG00000196747 [Sequence]  chr6:27808199-27808667 [Contig_View]  HIST1H2AI [Vega]
ICGC DataPortalENSG00000196747
TCGA cBioPortalHIST1H2AI
AceView (NCBI)HIST1H2AI
Genatlas (Paris)HIST1H2AI
WikiGenes8329
SOURCE (Princeton)HIST1H2AI
Genetics Home Reference (NIH)HIST1H2AI
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AI  -     chr6:27808199-27808667 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AI  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AI - 6p22.1 [CytoView hg19]  HIST1H2AI - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AI [Mapview hg19]  HIST1H2AI [Mapview hg38]
OMIM602787   
Gene and transcription
Genbank (Entrez)AK311766 BC112254 BC112256 EU446965
RefSeq transcript (Entrez)NM_003509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AI
Cluster EST : UnigeneHs.534035 [ NCBI ]
CGAP (NCI)Hs.534035
Alternative Splicing GalleryENSG00000196747
Gene ExpressionHIST1H2AI [ NCBI-GEO ]   HIST1H2AI [ EBI - ARRAY_EXPRESS ]   HIST1H2AI [ SEEK ]   HIST1H2AI [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8329
GTEX Portal (Tissue expression)HIST1H2AI
Human Protein AtlasENSG00000196747-HIST1H2AI [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0S8
Splice isoforms : SwissVarP0C0S8
PhosPhoSitePlusP0C0S8
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AI
DMDM Disease mutations8329
Blocks (Seattle)HIST1H2AI
PDB (SRS)4QYL    5KGF   
PDB (PDBSum)4QYL    5KGF   
PDB (IMB)4QYL    5KGF   
PDB (RSDB)4QYL    5KGF   
Structural Biology KnowledgeBase4QYL    5KGF   
SCOP (Structural Classification of Proteins)4QYL    5KGF   
CATH (Classification of proteins structures)4QYL    5KGF   
SuperfamilyP0C0S8
Human Protein Atlas [tissue]ENSG00000196747-HIST1H2AI [tissue]
Peptide AtlasP0C0S8
HPRD04153
IPIIPI00291764   IPI00552873   
Protein Interaction databases
DIP (DOE-UCLA)P0C0S8
IntAct (EBI)P0C0S8
FunCoupENSG00000196747
BioGRIDHIST1H2AI
STRING (EMBL)HIST1H2AI
ZODIACHIST1H2AI
Ontologies - Pathways
QuickGOP0C0S8
Ontology : AmiGOnucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  chromatin silencing  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  chromatin silencing  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2AI
Atlas of Cancer Signalling NetworkHIST1H2AI
Wikipedia pathwaysHIST1H2AI
Orthology - Evolution
OrthoDB8329
GeneTree (enSembl)ENSG00000196747
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AI
HOVERGENP0C0S8
HOGENOMP0C0S8
Homologs : HomoloGeneHIST1H2AI
Homology/Alignments : Family Browser (UCSC)HIST1H2AI
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AI
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AI
dbVarHIST1H2AI
ClinVarHIST1H2AI
1000_GenomesHIST1H2AI 
Exome Variant ServerHIST1H2AI
ExAC (Exome Aggregation Consortium)ENSG00000196747
GNOMAD BrowserENSG00000196747
Varsome BrowserHIST1H2AI
Genetic variants : HAPMAP8329
Genomic Variants (DGV)HIST1H2AI [DGVbeta]
DECIPHERHIST1H2AI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AI 
Mutations
ICGC Data PortalHIST1H2AI 
TCGA Data PortalHIST1H2AI 
Broad Tumor PortalHIST1H2AI
OASIS PortalHIST1H2AI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AI
DgiDB (Drug Gene Interaction Database)HIST1H2AI
DoCM (Curated mutations)HIST1H2AI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AI (select a term)
intoGenHIST1H2AI
Cancer3DHIST1H2AI(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602787   
Orphanet
DisGeNETHIST1H2AI
MedgenHIST1H2AI
Genetic Testing Registry HIST1H2AI
NextProtP0C0S8 [Medical]
TSGene8329
GENETestsHIST1H2AI
Target ValidationHIST1H2AI
Huge Navigator HIST1H2AI [HugePedia]
snp3D : Map Gene to Disease8329
BioCentury BCIQHIST1H2AI
ClinGenHIST1H2AI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8329
Chemical/Pharm GKB GenePA29102
Clinical trialHIST1H2AI
Miscellaneous
canSAR (ICR)HIST1H2AI (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AI
EVEXHIST1H2AI
GoPubMedHIST1H2AI
iHOPHIST1H2AI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:54 CEST 2018

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