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HIST1H2AJ (histone cluster 1 H2A family member j)

Identity

Alias_namesH2AFE
H2A histone family, member E
histone 1, H2aj
histone cluster 1, H2aj
Alias_symbol (synonym)H2A/E
Other aliasdJ160A22.4
HGNC (Hugo) HIST1H2AJ
LocusID (NCBI) 8331
Atlas_Id 64283
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27814302 and ends at 27814740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2AJ (6p22.1) / HMG20B (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2AJ   4727
Cards
Entrez_Gene (NCBI)HIST1H2AJ  8331  histone cluster 1 H2A family member j
AliasesH2A/E; H2AFE; dJ160A22.4
GeneCards (Weizmann)HIST1H2AJ
Ensembl hg19 (Hinxton)ENSG00000276368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276368 [Gene_View]  chr6:27814302-27814740 [Contig_View]  HIST1H2AJ [Vega]
ICGC DataPortalENSG00000276368
TCGA cBioPortalHIST1H2AJ
AceView (NCBI)HIST1H2AJ
Genatlas (Paris)HIST1H2AJ
WikiGenes8331
SOURCE (Princeton)HIST1H2AJ
Genetics Home Reference (NIH)HIST1H2AJ
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2AJ  -     chr6:27814302-27814740 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2AJ  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2AJ - 6p22.1 [CytoView hg19]  HIST1H2AJ - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2AJ [Mapview hg19]  HIST1H2AJ [Mapview hg38]
OMIM602791   
Gene and transcription
Genbank (Entrez)BC066232 BC066233 BC066234 BC066235 BC066236
RefSeq transcript (Entrez)NM_021066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2AJ
Cluster EST : UnigeneHs.406691 [ NCBI ]
CGAP (NCI)Hs.406691
Alternative Splicing GalleryENSG00000276368
Gene ExpressionHIST1H2AJ [ NCBI-GEO ]   HIST1H2AJ [ EBI - ARRAY_EXPRESS ]   HIST1H2AJ [ SEEK ]   HIST1H2AJ [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2AJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8331
GTEX Portal (Tissue expression)HIST1H2AJ
Human Protein AtlasENSG00000276368-HIST1H2AJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99878   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99878  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99878
Splice isoforms : SwissVarQ99878
PhosPhoSitePlusQ99878
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST1H2AJ
DMDM Disease mutations8331
Blocks (Seattle)HIST1H2AJ
SuperfamilyQ99878
Human Protein Atlas [tissue]ENSG00000276368-HIST1H2AJ [tissue]
Peptide AtlasQ99878
HPRD09102
Protein Interaction databases
DIP (DOE-UCLA)Q99878
IntAct (EBI)Q99878
FunCoupENSG00000276368
BioGRIDHIST1H2AJ
STRING (EMBL)HIST1H2AJ
ZODIACHIST1H2AJ
Ontologies - Pathways
QuickGOQ99878
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHIST1H2AJ
Atlas of Cancer Signalling NetworkHIST1H2AJ
Wikipedia pathwaysHIST1H2AJ
Orthology - Evolution
OrthoDB8331
GeneTree (enSembl)ENSG00000276368
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2AJ
HOVERGENQ99878
HOGENOMQ99878
Homologs : HomoloGeneHIST1H2AJ
Homology/Alignments : Family Browser (UCSC)HIST1H2AJ
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2AJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2AJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2AJ
dbVarHIST1H2AJ
ClinVarHIST1H2AJ
1000_GenomesHIST1H2AJ 
Exome Variant ServerHIST1H2AJ
ExAC (Exome Aggregation Consortium)ENSG00000276368
GNOMAD BrowserENSG00000276368
Genetic variants : HAPMAP8331
Genomic Variants (DGV)HIST1H2AJ [DGVbeta]
DECIPHERHIST1H2AJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2AJ 
Mutations
ICGC Data PortalHIST1H2AJ 
TCGA Data PortalHIST1H2AJ 
Broad Tumor PortalHIST1H2AJ
OASIS PortalHIST1H2AJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2AJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2AJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2AJ
DgiDB (Drug Gene Interaction Database)HIST1H2AJ
DoCM (Curated mutations)HIST1H2AJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2AJ (select a term)
intoGenHIST1H2AJ
Cancer3DHIST1H2AJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602791   
Orphanet
DisGeNETHIST1H2AJ
MedgenHIST1H2AJ
Genetic Testing Registry HIST1H2AJ
NextProtQ99878 [Medical]
TSGene8331
GENETestsHIST1H2AJ
Target ValidationHIST1H2AJ
Huge Navigator HIST1H2AJ [HugePedia]
snp3D : Map Gene to Disease8331
BioCentury BCIQHIST1H2AJ
ClinGenHIST1H2AJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8331
Chemical/Pharm GKB GenePA29104
Clinical trialHIST1H2AJ
Miscellaneous
canSAR (ICR)HIST1H2AJ (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2AJ
EVEXHIST1H2AJ
GoPubMedHIST1H2AJ
iHOPHIST1H2AJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:17 CET 2018

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