Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIST1H2APS1 (histone cluster 1 H2A pseudogene 1)

Identity

Alias_nameshistone 1, H2a, pseudogene 1
histone cluster 1, H2a, pseudogene 1
Alias_symbol (synonym)bA317E16.5
H2AFSP
Other alias
HGNC (Hugo) HIST1H2APS1
LocusID (NCBI) 387319
Atlas_Id 64287
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25732433 and ends at 25732861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2APS1   18720
Cards
Entrez_Gene (NCBI)HIST1H2APS1  387319  histone cluster 1 H2A pseudogene 1
AliasesH2AFSP; bA317E16.5
GeneCards (Weizmann)HIST1H2APS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:25732433-25732861 [Contig_View]  HIST1H2APS1 [Vega]
TCGA cBioPortalHIST1H2APS1
AceView (NCBI)HIST1H2APS1
Genatlas (Paris)HIST1H2APS1
WikiGenes387319
SOURCE (Princeton)HIST1H2APS1
Genetics Home Reference (NIH)HIST1H2APS1
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2APS1  -     chr6:25732433-25732861 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2APS1  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2APS1 - 6p22.2 [CytoView hg19]  HIST1H2APS1 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2APS1 [Mapview hg19]  HIST1H2APS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB441866
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2APS1
Cluster EST : UnigeneHs.741681 [ NCBI ]
CGAP (NCI)Hs.741681
Gene ExpressionHIST1H2APS1 [ NCBI-GEO ]   HIST1H2APS1 [ EBI - ARRAY_EXPRESS ]   HIST1H2APS1 [ SEEK ]   HIST1H2APS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2APS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387319
GTEX Portal (Tissue expression)HIST1H2APS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HIST1H2APS1
DMDM Disease mutations387319
Blocks (Seattle)HIST1H2APS1
Protein Interaction databases
BioGRIDHIST1H2APS1
STRING (EMBL)HIST1H2APS1
ZODIACHIST1H2APS1
Ontologies - Pathways
Huge Navigator HIST1H2APS1 [HugePedia]
snp3D : Map Gene to Disease387319
BioCentury BCIQHIST1H2APS1
ClinGenHIST1H2APS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387319
Chemical/Pharm GKB GenePA134911681
Clinical trialHIST1H2APS1
Miscellaneous
canSAR (ICR)HIST1H2APS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2APS1
EVEXHIST1H2APS1
GoPubMedHIST1H2APS1
iHOPHIST1H2APS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:55 CEST 2018

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