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HIST1H2BA (histone cluster 1 H2B family member a)

Identity

Other aliasH2BFU
STBP
TH2B
TSH2B
TSH2B.1
bA317E16.3
hTSH2B
HGNC (Hugo) HIST1H2BA
LocusID (NCBI) 255626
Atlas_Id 56667
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25726909 and ends at 25727345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BA   18730
Cards
Entrez_Gene (NCBI)HIST1H2BA  255626  histone cluster 1 H2B family member a
AliasesH2BFU; STBP; TH2B; TSH2B; 
TSH2B.1; bA317E16.3; hTSH2B
GeneCards (Weizmann)HIST1H2BA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:25726909-25727345 [Contig_View]  HIST1H2BA [Vega]
TCGA cBioPortalHIST1H2BA
AceView (NCBI)HIST1H2BA
Genatlas (Paris)HIST1H2BA
WikiGenes255626
SOURCE (Princeton)HIST1H2BA
Genetics Home Reference (NIH)HIST1H2BA
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BA  -     chr6:25726909-25727345 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BA  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BA - 6p22.2 [CytoView hg19]  HIST1H2BA - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BA [Mapview hg19]  HIST1H2BA [Mapview hg38]
OMIM609904   
Gene and transcription
Genbank (Entrez)AK312055 BC066238 BC066239 BC066240 BC066241
RefSeq transcript (Entrez)NM_170610
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BA
Cluster EST : UnigeneHs.591786 [ NCBI ]
CGAP (NCI)Hs.591786
Gene ExpressionHIST1H2BA [ NCBI-GEO ]   HIST1H2BA [ EBI - ARRAY_EXPRESS ]   HIST1H2BA [ SEEK ]   HIST1H2BA [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255626
GTEX Portal (Tissue expression)HIST1H2BA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A08
Splice isoforms : SwissVarQ96A08
PhosPhoSitePlusQ96A08
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BA
DMDM Disease mutations255626
Blocks (Seattle)HIST1H2BA
PDB (SRS)3WKJ    5GSU    5GT3   
PDB (PDBSum)3WKJ    5GSU    5GT3   
PDB (IMB)3WKJ    5GSU    5GT3   
PDB (RSDB)3WKJ    5GSU    5GT3   
Structural Biology KnowledgeBase3WKJ    5GSU    5GT3   
SCOP (Structural Classification of Proteins)3WKJ    5GSU    5GT3   
CATH (Classification of proteins structures)3WKJ    5GSU    5GT3   
SuperfamilyQ96A08
Peptide AtlasQ96A08
IPIIPI00465363   
Protein Interaction databases
DIP (DOE-UCLA)Q96A08
IntAct (EBI)Q96A08
BioGRIDHIST1H2BA
STRING (EMBL)HIST1H2BA
ZODIACHIST1H2BA
Ontologies - Pathways
QuickGOQ96A08
Ontology : AmiGOnuclear chromosome, telomeric region  nucleosome  nucleosome  nuclear nucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleosome assembly  nucleosome assembly  nucleosome assembly  nucleosome disassembly  inflammatory response  protein ubiquitination  extrinsic component of plasma membrane  plasminogen activation  spermatogenesis, exchange of chromosomal proteins  histone binding  protein heterodimerization activity  positive regulation of binding  mononuclear cell migration  
Ontology : EGO-EBInuclear chromosome, telomeric region  nucleosome  nucleosome  nuclear nucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleosome assembly  nucleosome assembly  nucleosome assembly  nucleosome disassembly  inflammatory response  protein ubiquitination  extrinsic component of plasma membrane  plasminogen activation  spermatogenesis, exchange of chromosomal proteins  histone binding  protein heterodimerization activity  positive regulation of binding  mononuclear cell migration  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkHIST1H2BA
Atlas of Cancer Signalling NetworkHIST1H2BA
Wikipedia pathwaysHIST1H2BA
Orthology - Evolution
OrthoDB255626
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BA
HOVERGENQ96A08
HOGENOMQ96A08
Homologs : HomoloGeneHIST1H2BA
Homology/Alignments : Family Browser (UCSC)HIST1H2BA
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BA
dbVarHIST1H2BA
ClinVarHIST1H2BA
1000_GenomesHIST1H2BA 
Exome Variant ServerHIST1H2BA
Varsome BrowserHIST1H2BA
Genetic variants : HAPMAP255626
Genomic Variants (DGV)HIST1H2BA [DGVbeta]
DECIPHERHIST1H2BA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BA 
Mutations
ICGC Data PortalHIST1H2BA 
TCGA Data PortalHIST1H2BA 
Broad Tumor PortalHIST1H2BA
OASIS PortalHIST1H2BA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIST1H2BA
BioMutasearch HIST1H2BA
DgiDB (Drug Gene Interaction Database)HIST1H2BA
DoCM (Curated mutations)HIST1H2BA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BA (select a term)
intoGenHIST1H2BA
Cancer3DHIST1H2BA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609904   
Orphanet
DisGeNETHIST1H2BA
MedgenHIST1H2BA
Genetic Testing Registry HIST1H2BA
NextProtQ96A08 [Medical]
TSGene255626
GENETestsHIST1H2BA
Target ValidationHIST1H2BA
Huge Navigator HIST1H2BA [HugePedia]
snp3D : Map Gene to Disease255626
BioCentury BCIQHIST1H2BA
ClinGenHIST1H2BA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255626
Chemical/Pharm GKB GenePA134937673
Clinical trialHIST1H2BA
Miscellaneous
canSAR (ICR)HIST1H2BA (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BA
EVEXHIST1H2BA
GoPubMedHIST1H2BA
iHOPHIST1H2BA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:26:58 CEST 2018

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