Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HIST1H2BB (histone cluster 1 H2B family member b)

Identity

Other aliasH2B.1
H2B/f
H2BFF
HGNC (Hugo) HIST1H2BB
LocusID (NCBI) 3018
Atlas_Id 56694
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26043227 and ends at 26043657 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BB   4751
Cards
Entrez_Gene (NCBI)HIST1H2BB  3018  histone cluster 1 H2B family member b
AliasesH2B.1; H2B/f; H2BFF
GeneCards (Weizmann)HIST1H2BB
Ensembl hg19 (Hinxton)ENSG00000276410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276410 [Gene_View]  ENSG00000276410 [Sequence]  chr6:26043227-26043657 [Contig_View]  HIST1H2BB [Vega]
ICGC DataPortalENSG00000276410
TCGA cBioPortalHIST1H2BB
AceView (NCBI)HIST1H2BB
Genatlas (Paris)HIST1H2BB
WikiGenes3018
SOURCE (Princeton)HIST1H2BB
Genetics Home Reference (NIH)HIST1H2BB
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BB  -     chr6:26043227-26043657 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BB  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BB - 6p22.2 [CytoView hg19]  HIST1H2BB - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BB [Mapview hg19]  HIST1H2BB [Mapview hg38]
OMIM602803   
Gene and transcription
Genbank (Entrez)BC096728
RefSeq transcript (Entrez)NM_021062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BB
Cluster EST : UnigeneHs.553494 [ NCBI ]
CGAP (NCI)Hs.553494
Alternative Splicing GalleryENSG00000276410
Gene ExpressionHIST1H2BB [ NCBI-GEO ]   HIST1H2BB [ EBI - ARRAY_EXPRESS ]   HIST1H2BB [ SEEK ]   HIST1H2BB [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3018
GTEX Portal (Tissue expression)HIST1H2BB
Human Protein AtlasENSG00000276410-HIST1H2BB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP33778   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP33778  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP33778
Splice isoforms : SwissVarP33778
PhosPhoSitePlusP33778
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BB
DMDM Disease mutations3018
Blocks (Seattle)HIST1H2BB
PDB (SRS)3X1S    3X1U   
PDB (PDBSum)3X1S    3X1U   
PDB (IMB)3X1S    3X1U   
PDB (RSDB)3X1S    3X1U   
Structural Biology KnowledgeBase3X1S    3X1U   
SCOP (Structural Classification of Proteins)3X1S    3X1U   
CATH (Classification of proteins structures)3X1S    3X1U   
SuperfamilyP33778
Human Protein Atlas [tissue]ENSG00000276410-HIST1H2BB [tissue]
Peptide AtlasP33778
IPIIPI00220403   
Protein Interaction databases
DIP (DOE-UCLA)P33778
IntAct (EBI)P33778
FunCoupENSG00000276410
BioGRIDHIST1H2BB
STRING (EMBL)HIST1H2BB
ZODIACHIST1H2BB
Ontologies - Pathways
QuickGOP33778
Ontology : AmiGOnuclear chromosome, telomeric region  nucleosome  DNA binding  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  
Ontology : EGO-EBInuclear chromosome, telomeric region  nucleosome  DNA binding  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkHIST1H2BB
Atlas of Cancer Signalling NetworkHIST1H2BB
Wikipedia pathwaysHIST1H2BB
Orthology - Evolution
OrthoDB3018
GeneTree (enSembl)ENSG00000276410
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BB
HOVERGENP33778
HOGENOMP33778
Homologs : HomoloGeneHIST1H2BB
Homology/Alignments : Family Browser (UCSC)HIST1H2BB
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BB
dbVarHIST1H2BB
ClinVarHIST1H2BB
1000_GenomesHIST1H2BB 
Exome Variant ServerHIST1H2BB
ExAC (Exome Aggregation Consortium)ENSG00000276410
GNOMAD BrowserENSG00000276410
Varsome BrowserHIST1H2BB
Genetic variants : HAPMAP3018
Genomic Variants (DGV)HIST1H2BB [DGVbeta]
DECIPHERHIST1H2BB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BB 
Mutations
ICGC Data PortalHIST1H2BB 
TCGA Data PortalHIST1H2BB 
Broad Tumor PortalHIST1H2BB
OASIS PortalHIST1H2BB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BB
DgiDB (Drug Gene Interaction Database)HIST1H2BB
DoCM (Curated mutations)HIST1H2BB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BB (select a term)
intoGenHIST1H2BB
Cancer3DHIST1H2BB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602803   
Orphanet
DisGeNETHIST1H2BB
MedgenHIST1H2BB
Genetic Testing Registry HIST1H2BB
NextProtP33778 [Medical]
TSGene3018
GENETestsHIST1H2BB
Target ValidationHIST1H2BB
Huge Navigator HIST1H2BB [HugePedia]
snp3D : Map Gene to Disease3018
BioCentury BCIQHIST1H2BB
ClinGenHIST1H2BB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3018
Chemical/Pharm GKB GenePA29126
Clinical trialHIST1H2BB
Miscellaneous
canSAR (ICR)HIST1H2BB (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BB
EVEXHIST1H2BB
GoPubMedHIST1H2BB
iHOPHIST1H2BB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:10:53 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.