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HIST1H2BE (histone cluster 1 H2B family member e)

Identity

Alias_namesH2BFH
H2B histone family, member H
histone 1, H2be
histone cluster 1, H2be
Alias_symbol (synonym)H2B/h
H2B.h
Other aliasdJ221C16.8
HGNC (Hugo) HIST1H2BE
LocusID (NCBI) 8344
Atlas_Id 64292
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26183796 and ends at 26184230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BE (6p22.2) / NPC1 (18q11.2)HIST1H2BE (6p22.2) / PGM3 (6q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BE   4753
Cards
Entrez_Gene (NCBI)HIST1H2BE  8344  histone cluster 1 H2B family member e
AliasesH2B.h; H2B/h; H2BFH; dJ221C16.8
GeneCards (Weizmann)HIST1H2BE
Ensembl hg19 (Hinxton)ENSG00000274290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274290 [Gene_View]  ENSG00000274290 [Sequence]  chr6:26183796-26184230 [Contig_View]  HIST1H2BE [Vega]
ICGC DataPortalENSG00000274290
TCGA cBioPortalHIST1H2BE
AceView (NCBI)HIST1H2BE
Genatlas (Paris)HIST1H2BE
WikiGenes8344
SOURCE (Princeton)HIST1H2BE
Genetics Home Reference (NIH)HIST1H2BE
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BE  -     chr6:26183796-26184230 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BE  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BE - 6p22.2 [CytoView hg19]  HIST1H2BE - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BE [Mapview hg19]  HIST1H2BE [Mapview hg38]
OMIM602805   
Gene and transcription
Genbank (Entrez)BC101748 BC101750 EU446967
RefSeq transcript (Entrez)NM_003523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BE
Cluster EST : UnigeneHs.534369 [ NCBI ]
CGAP (NCI)Hs.534369
Alternative Splicing GalleryENSG00000274290
Gene ExpressionHIST1H2BE [ NCBI-GEO ]   HIST1H2BE [ EBI - ARRAY_EXPRESS ]   HIST1H2BE [ SEEK ]   HIST1H2BE [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8344
GTEX Portal (Tissue expression)HIST1H2BE
Human Protein AtlasENSG00000274290-HIST1H2BE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62807
Splice isoforms : SwissVarP62807
PhosPhoSitePlusP62807
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BE
DMDM Disease mutations8344
Blocks (Seattle)HIST1H2BE
PDB (SRS)5KGF   
PDB (PDBSum)5KGF   
PDB (IMB)5KGF   
PDB (RSDB)5KGF   
Structural Biology KnowledgeBase5KGF   
SCOP (Structural Classification of Proteins)5KGF   
CATH (Classification of proteins structures)5KGF   
SuperfamilyP62807
Human Protein Atlas [tissue]ENSG00000274290-HIST1H2BE [tissue]
Peptide AtlasP62807
HPRD11901
Protein Interaction databases
DIP (DOE-UCLA)P62807
IntAct (EBI)P62807
FunCoupENSG00000274290
BioGRIDHIST1H2BE
STRING (EMBL)HIST1H2BE
ZODIACHIST1H2BE
Ontologies - Pathways
QuickGOP62807
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkHIST1H2BE
Atlas of Cancer Signalling NetworkHIST1H2BE
Wikipedia pathwaysHIST1H2BE
Orthology - Evolution
OrthoDB8344
GeneTree (enSembl)ENSG00000274290
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BE
HOVERGENP62807
HOGENOMP62807
Homologs : HomoloGeneHIST1H2BE
Homology/Alignments : Family Browser (UCSC)HIST1H2BE
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BE
dbVarHIST1H2BE
ClinVarHIST1H2BE
1000_GenomesHIST1H2BE 
Exome Variant ServerHIST1H2BE
ExAC (Exome Aggregation Consortium)ENSG00000274290
GNOMAD BrowserENSG00000274290
Varsome BrowserHIST1H2BE
Genetic variants : HAPMAP8344
Genomic Variants (DGV)HIST1H2BE [DGVbeta]
DECIPHERHIST1H2BE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BE 
Mutations
ICGC Data PortalHIST1H2BE 
TCGA Data PortalHIST1H2BE 
Broad Tumor PortalHIST1H2BE
OASIS PortalHIST1H2BE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BE
DgiDB (Drug Gene Interaction Database)HIST1H2BE
DoCM (Curated mutations)HIST1H2BE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BE (select a term)
intoGenHIST1H2BE
Cancer3DHIST1H2BE(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602805   
Orphanet
DisGeNETHIST1H2BE
MedgenHIST1H2BE
Genetic Testing Registry HIST1H2BE
NextProtP62807 [Medical]
TSGene8344
GENETestsHIST1H2BE
Target ValidationHIST1H2BE
Huge Navigator HIST1H2BE [HugePedia]
snp3D : Map Gene to Disease8344
BioCentury BCIQHIST1H2BE
ClinGenHIST1H2BE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8344
Chemical/Pharm GKB GenePA29128
Clinical trialHIST1H2BE
Miscellaneous
canSAR (ICR)HIST1H2BE (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BE
EVEXHIST1H2BE
GoPubMedHIST1H2BE
iHOPHIST1H2BE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:56 CEST 2018

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