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HIST1H2BF (histone cluster 1 H2B family member f)

Identity

Alias_namesH2BFG
H2B histone family, member G
histone 1, H2bf
histone cluster 1, H2bf
Alias_symbol (synonym)H2B/g
Other alias
HGNC (Hugo) HIST1H2BF
LocusID (NCBI) 8343
Atlas_Id 64293
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26199559 and ends at 26199988 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BF   4752
Cards
Entrez_Gene (NCBI)HIST1H2BF  8343  histone cluster 1 H2B family member f
AliasesH2B/g; H2BFG
GeneCards (Weizmann)HIST1H2BF
Ensembl hg19 (Hinxton)ENSG00000277224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277224 [Gene_View]  ENSG00000277224 [Sequence]  chr6:26199559-26199988 [Contig_View]  HIST1H2BF [Vega]
ICGC DataPortalENSG00000277224
TCGA cBioPortalHIST1H2BF
AceView (NCBI)HIST1H2BF
Genatlas (Paris)HIST1H2BF
WikiGenes8343
SOURCE (Princeton)HIST1H2BF
Genetics Home Reference (NIH)HIST1H2BF
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BF  -     chr6:26199559-26199988 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BF  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BF - 6p22.2 [CytoView hg19]  HIST1H2BF - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BF [Mapview hg19]  HIST1H2BF [Mapview hg38]
OMIM602804   
Gene and transcription
Genbank (Entrez)BC056264 BC096120 BC096123
RefSeq transcript (Entrez)NM_003522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BF
Cluster EST : UnigeneHs.182137 [ NCBI ]
CGAP (NCI)Hs.182137
Alternative Splicing GalleryENSG00000277224
Gene ExpressionHIST1H2BF [ NCBI-GEO ]   HIST1H2BF [ EBI - ARRAY_EXPRESS ]   HIST1H2BF [ SEEK ]   HIST1H2BF [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8343
GTEX Portal (Tissue expression)HIST1H2BF
Human Protein AtlasENSG00000277224-HIST1H2BF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62807
Splice isoforms : SwissVarP62807
PhosPhoSitePlusP62807
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BF
DMDM Disease mutations8343
Blocks (Seattle)HIST1H2BF
PDB (SRS)5KGF   
PDB (PDBSum)5KGF   
PDB (IMB)5KGF   
PDB (RSDB)5KGF   
Structural Biology KnowledgeBase5KGF   
SCOP (Structural Classification of Proteins)5KGF   
CATH (Classification of proteins structures)5KGF   
SuperfamilyP62807
Human Protein Atlas [tissue]ENSG00000277224-HIST1H2BF [tissue]
Peptide AtlasP62807
HPRD11900
Protein Interaction databases
DIP (DOE-UCLA)P62807
IntAct (EBI)P62807
FunCoupENSG00000277224
BioGRIDHIST1H2BF
STRING (EMBL)HIST1H2BF
ZODIACHIST1H2BF
Ontologies - Pathways
QuickGOP62807
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkHIST1H2BF
Atlas of Cancer Signalling NetworkHIST1H2BF
Wikipedia pathwaysHIST1H2BF
Orthology - Evolution
OrthoDB8343
GeneTree (enSembl)ENSG00000277224
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BF
HOVERGENP62807
HOGENOMP62807
Homologs : HomoloGeneHIST1H2BF
Homology/Alignments : Family Browser (UCSC)HIST1H2BF
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BF
dbVarHIST1H2BF
ClinVarHIST1H2BF
1000_GenomesHIST1H2BF 
Exome Variant ServerHIST1H2BF
ExAC (Exome Aggregation Consortium)ENSG00000277224
GNOMAD BrowserENSG00000277224
Varsome BrowserHIST1H2BF
Genetic variants : HAPMAP8343
Genomic Variants (DGV)HIST1H2BF [DGVbeta]
DECIPHERHIST1H2BF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BF 
Mutations
ICGC Data PortalHIST1H2BF 
TCGA Data PortalHIST1H2BF 
Broad Tumor PortalHIST1H2BF
OASIS PortalHIST1H2BF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BF
DgiDB (Drug Gene Interaction Database)HIST1H2BF
DoCM (Curated mutations)HIST1H2BF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BF (select a term)
intoGenHIST1H2BF
Cancer3DHIST1H2BF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602804   
Orphanet
DisGeNETHIST1H2BF
MedgenHIST1H2BF
Genetic Testing Registry HIST1H2BF
NextProtP62807 [Medical]
TSGene8343
GENETestsHIST1H2BF
Target ValidationHIST1H2BF
Huge Navigator HIST1H2BF [HugePedia]
snp3D : Map Gene to Disease8343
BioCentury BCIQHIST1H2BF
ClinGenHIST1H2BF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8343
Chemical/Pharm GKB GenePA29127
Clinical trialHIST1H2BF
Miscellaneous
canSAR (ICR)HIST1H2BF (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BF
EVEXHIST1H2BF
GoPubMedHIST1H2BF
iHOPHIST1H2BF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:56 CEST 2018

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