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HIST1H2BG (histone cluster 1 H2B family member g)

Identity

Alias_namesH2BFA
H2B histone family, member A
histone 1, H2bg
histone cluster 1, H2bg
Alias_symbol (synonym)H2B/a
H2B.1A
Other aliasdJ221C16.8
HGNC (Hugo) HIST1H2BG
LocusID (NCBI) 8339
Atlas_Id 64294
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26216201 and ends at 26216644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BG (6p22.2) / CRMP1 (4p16.2)HIST1H2BG (6p22.2) / SRSF5 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BG   4746
Cards
Entrez_Gene (NCBI)HIST1H2BG  8339  histone cluster 1 H2B family member g
AliasesH2B.1A; H2B/a; H2BFA; dJ221C16.8
GeneCards (Weizmann)HIST1H2BG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:26216201-26216644 [Contig_View]  HIST1H2BG [Vega]
TCGA cBioPortalHIST1H2BG
AceView (NCBI)HIST1H2BG
Genatlas (Paris)HIST1H2BG
WikiGenes8339
SOURCE (Princeton)HIST1H2BG
Genetics Home Reference (NIH)HIST1H2BG
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BG  -     chr6:26216201-26216644 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BG  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BG - 6p22.2 [CytoView hg19]  HIST1H2BG - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BG [Mapview hg19]  HIST1H2BG [Mapview hg38]
OMIM602798   
Gene and transcription
Genbank (Entrez)AK311935 BC082232 EU446968
RefSeq transcript (Entrez)NM_003518
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BG
Cluster EST : UnigeneHs.591809 [ NCBI ]
CGAP (NCI)Hs.591809
Gene ExpressionHIST1H2BG [ NCBI-GEO ]   HIST1H2BG [ EBI - ARRAY_EXPRESS ]   HIST1H2BG [ SEEK ]   HIST1H2BG [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8339
GTEX Portal (Tissue expression)HIST1H2BG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62807
Splice isoforms : SwissVarP62807
PhosPhoSitePlusP62807
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BG
DMDM Disease mutations8339
Blocks (Seattle)HIST1H2BG
PDB (SRS)5KGF   
PDB (PDBSum)5KGF   
PDB (IMB)5KGF   
PDB (RSDB)5KGF   
Structural Biology KnowledgeBase5KGF   
SCOP (Structural Classification of Proteins)5KGF   
CATH (Classification of proteins structures)5KGF   
SuperfamilyP62807
Peptide AtlasP62807
HPRD11897
IPIIPI00020101   
Protein Interaction databases
DIP (DOE-UCLA)P62807
IntAct (EBI)P62807
BioGRIDHIST1H2BG
STRING (EMBL)HIST1H2BG
ZODIACHIST1H2BG
Ontologies - Pathways
QuickGOP62807
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkHIST1H2BG
Atlas of Cancer Signalling NetworkHIST1H2BG
Wikipedia pathwaysHIST1H2BG
Orthology - Evolution
OrthoDB8339
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BG
HOVERGENP62807
HOGENOMP62807
Homologs : HomoloGeneHIST1H2BG
Homology/Alignments : Family Browser (UCSC)HIST1H2BG
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BG
dbVarHIST1H2BG
ClinVarHIST1H2BG
1000_GenomesHIST1H2BG 
Exome Variant ServerHIST1H2BG
Varsome BrowserHIST1H2BG
Genetic variants : HAPMAP8339
Genomic Variants (DGV)HIST1H2BG [DGVbeta]
DECIPHERHIST1H2BG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BG 
Mutations
ICGC Data PortalHIST1H2BG 
TCGA Data PortalHIST1H2BG 
Broad Tumor PortalHIST1H2BG
OASIS PortalHIST1H2BG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BG
DgiDB (Drug Gene Interaction Database)HIST1H2BG
DoCM (Curated mutations)HIST1H2BG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BG (select a term)
intoGenHIST1H2BG
Cancer3DHIST1H2BG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602798   
Orphanet
DisGeNETHIST1H2BG
MedgenHIST1H2BG
Genetic Testing Registry HIST1H2BG
NextProtP62807 [Medical]
TSGene8339
GENETestsHIST1H2BG
Target ValidationHIST1H2BG
Huge Navigator HIST1H2BG [HugePedia]
snp3D : Map Gene to Disease8339
BioCentury BCIQHIST1H2BG
ClinGenHIST1H2BG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8339
Chemical/Pharm GKB GenePA29121
Clinical trialHIST1H2BG
Miscellaneous
canSAR (ICR)HIST1H2BG (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BG
EVEXHIST1H2BG
GoPubMedHIST1H2BG
iHOPHIST1H2BG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:56 CEST 2018

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