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HIST1H2BH (histone cluster 1 H2B family member h)

Identity

Alias_namesH2BFJ
H2B histone family, member J
histone 1, H2bh
histone cluster 1, H2bh
Alias_symbol (synonym)H2B/j
Other alias
HGNC (Hugo) HIST1H2BH
LocusID (NCBI) 8345
Atlas_Id 64295
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26251651 and ends at 26252075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BH (6p22.2) / EEF1A1 (6q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BH   4755
Cards
Entrez_Gene (NCBI)HIST1H2BH  8345  histone cluster 1 H2B family member h
AliasesH2B/j; H2BFJ
GeneCards (Weizmann)HIST1H2BH
Ensembl hg19 (Hinxton)ENSG00000275713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275713 [Gene_View]  chr6:26251651-26252075 [Contig_View]  HIST1H2BH [Vega]
ICGC DataPortalENSG00000275713
TCGA cBioPortalHIST1H2BH
AceView (NCBI)HIST1H2BH
Genatlas (Paris)HIST1H2BH
WikiGenes8345
SOURCE (Princeton)HIST1H2BH
Genetics Home Reference (NIH)HIST1H2BH
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BH  -     chr6:26251651-26252075 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BH  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BH - 6p22.2 [CytoView hg19]  HIST1H2BH - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BH [Mapview hg19]  HIST1H2BH [Mapview hg38]
OMIM602806   
Gene and transcription
Genbank (Entrez)AK312052 BC096116 BC096117 BC096118 BC096119
RefSeq transcript (Entrez)NM_003524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BH
Cluster EST : UnigeneHs.247815 [ NCBI ]
CGAP (NCI)Hs.247815
Alternative Splicing GalleryENSG00000275713
Gene ExpressionHIST1H2BH [ NCBI-GEO ]   HIST1H2BH [ EBI - ARRAY_EXPRESS ]   HIST1H2BH [ SEEK ]   HIST1H2BH [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8345
GTEX Portal (Tissue expression)HIST1H2BH
Human Protein AtlasENSG00000275713-HIST1H2BH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93079   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93079  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93079
Splice isoforms : SwissVarQ93079
PhosPhoSitePlusQ93079
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BH
DMDM Disease mutations8345
Blocks (Seattle)HIST1H2BH
SuperfamilyQ93079
Human Protein Atlas [tissue]ENSG00000275713-HIST1H2BH [tissue]
Peptide AtlasQ93079
HPRD11902
IPIIPI00303133   
Protein Interaction databases
DIP (DOE-UCLA)Q93079
IntAct (EBI)Q93079
FunCoupENSG00000275713
BioGRIDHIST1H2BH
STRING (EMBL)HIST1H2BH
ZODIACHIST1H2BH
Ontologies - Pathways
QuickGOQ93079
Ontology : AmiGOnucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2BH
Atlas of Cancer Signalling NetworkHIST1H2BH
Wikipedia pathwaysHIST1H2BH
Orthology - Evolution
OrthoDB8345
GeneTree (enSembl)ENSG00000275713
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BH
HOVERGENQ93079
HOGENOMQ93079
Homologs : HomoloGeneHIST1H2BH
Homology/Alignments : Family Browser (UCSC)HIST1H2BH
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BH
dbVarHIST1H2BH
ClinVarHIST1H2BH
1000_GenomesHIST1H2BH 
Exome Variant ServerHIST1H2BH
ExAC (Exome Aggregation Consortium)ENSG00000275713
GNOMAD BrowserENSG00000275713
Genetic variants : HAPMAP8345
Genomic Variants (DGV)HIST1H2BH [DGVbeta]
DECIPHERHIST1H2BH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BH 
Mutations
ICGC Data PortalHIST1H2BH 
TCGA Data PortalHIST1H2BH 
Broad Tumor PortalHIST1H2BH
OASIS PortalHIST1H2BH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BH
DgiDB (Drug Gene Interaction Database)HIST1H2BH
DoCM (Curated mutations)HIST1H2BH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BH (select a term)
intoGenHIST1H2BH
Cancer3DHIST1H2BH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602806   
Orphanet
DisGeNETHIST1H2BH
MedgenHIST1H2BH
Genetic Testing Registry HIST1H2BH
NextProtQ93079 [Medical]
TSGene8345
GENETestsHIST1H2BH
Target ValidationHIST1H2BH
Huge Navigator HIST1H2BH [HugePedia]
snp3D : Map Gene to Disease8345
BioCentury BCIQHIST1H2BH
ClinGenHIST1H2BH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8345
Chemical/Pharm GKB GenePA29130
Clinical trialHIST1H2BH
Miscellaneous
canSAR (ICR)HIST1H2BH (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BH
EVEXHIST1H2BH
GoPubMedHIST1H2BH
iHOPHIST1H2BH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:19 CET 2018

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