Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIST1H2BI (histone cluster 1 H2B family member i)

Identity

Alias_namesH2BFK
H2B histone family, member K
histone 1, H2bi
histone cluster 1, H2bi
Alias_symbol (synonym)H2B/k
Other alias
HGNC (Hugo) HIST1H2BI
LocusID (NCBI) 8346
Atlas_Id 64296
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26272976 and ends at 26273412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BI   4756
Cards
Entrez_Gene (NCBI)HIST1H2BI  8346  histone cluster 1 H2B family member i
AliasesH2B/k; H2BFK
GeneCards (Weizmann)HIST1H2BI
Ensembl hg19 (Hinxton)ENSG00000278588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278588 [Gene_View]  chr6:26272976-26273412 [Contig_View]  HIST1H2BI [Vega]
ICGC DataPortalENSG00000278588
TCGA cBioPortalHIST1H2BI
AceView (NCBI)HIST1H2BI
Genatlas (Paris)HIST1H2BI
WikiGenes8346
SOURCE (Princeton)HIST1H2BI
Genetics Home Reference (NIH)HIST1H2BI
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BI  -     chr6:26272976-26273412 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BI  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BI - 6p22.2 [CytoView hg19]  HIST1H2BI - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BI [Mapview hg19]  HIST1H2BI [Mapview hg38]
OMIM602807   
Gene and transcription
Genbank (Entrez)BC101653 BC101655 EU446969
RefSeq transcript (Entrez)NM_003525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BI
Cluster EST : UnigeneHs.553506 [ NCBI ]
CGAP (NCI)Hs.553506
Alternative Splicing GalleryENSG00000278588
Gene ExpressionHIST1H2BI [ NCBI-GEO ]   HIST1H2BI [ EBI - ARRAY_EXPRESS ]   HIST1H2BI [ SEEK ]   HIST1H2BI [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8346
GTEX Portal (Tissue expression)HIST1H2BI
Human Protein AtlasENSG00000278588-HIST1H2BI [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62807
Splice isoforms : SwissVarP62807
PhosPhoSitePlusP62807
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BI
DMDM Disease mutations8346
Blocks (Seattle)HIST1H2BI
PDB (SRS)5KGF   
PDB (PDBSum)5KGF   
PDB (IMB)5KGF   
PDB (RSDB)5KGF   
Structural Biology KnowledgeBase5KGF   
SCOP (Structural Classification of Proteins)5KGF   
CATH (Classification of proteins structures)5KGF   
SuperfamilyP62807
Human Protein Atlas [tissue]ENSG00000278588-HIST1H2BI [tissue]
Peptide AtlasP62807
HPRD11903
Protein Interaction databases
DIP (DOE-UCLA)P62807
IntAct (EBI)P62807
FunCoupENSG00000278588
BioGRIDHIST1H2BI
STRING (EMBL)HIST1H2BI
ZODIACHIST1H2BI
Ontologies - Pathways
QuickGOP62807
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkHIST1H2BI
Atlas of Cancer Signalling NetworkHIST1H2BI
Wikipedia pathwaysHIST1H2BI
Orthology - Evolution
OrthoDB8346
GeneTree (enSembl)ENSG00000278588
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BI
HOVERGENP62807
HOGENOMP62807
Homologs : HomoloGeneHIST1H2BI
Homology/Alignments : Family Browser (UCSC)HIST1H2BI
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BI
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BI
dbVarHIST1H2BI
ClinVarHIST1H2BI
1000_GenomesHIST1H2BI 
Exome Variant ServerHIST1H2BI
ExAC (Exome Aggregation Consortium)ENSG00000278588
GNOMAD BrowserENSG00000278588
Genetic variants : HAPMAP8346
Genomic Variants (DGV)HIST1H2BI [DGVbeta]
DECIPHERHIST1H2BI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BI 
Mutations
ICGC Data PortalHIST1H2BI 
TCGA Data PortalHIST1H2BI 
Broad Tumor PortalHIST1H2BI
OASIS PortalHIST1H2BI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BI
DgiDB (Drug Gene Interaction Database)HIST1H2BI
DoCM (Curated mutations)HIST1H2BI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BI (select a term)
intoGenHIST1H2BI
Cancer3DHIST1H2BI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602807   
Orphanet
DisGeNETHIST1H2BI
MedgenHIST1H2BI
Genetic Testing Registry HIST1H2BI
NextProtP62807 [Medical]
TSGene8346
GENETestsHIST1H2BI
Target ValidationHIST1H2BI
Huge Navigator HIST1H2BI [HugePedia]
snp3D : Map Gene to Disease8346
BioCentury BCIQHIST1H2BI
ClinGenHIST1H2BI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8346
Chemical/Pharm GKB GenePA29131
Clinical trialHIST1H2BI
Miscellaneous
canSAR (ICR)HIST1H2BI (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BI
EVEXHIST1H2BI
GoPubMedHIST1H2BI
iHOPHIST1H2BI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:19 CET 2018

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