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HIST1H2BK (histone cluster 1 H2B family member k)

Identity

Alias_namesH2BFT
H2B histone family, member T
histone 1, H2bk
histone cluster 1, H2bk
Alias_symbol (synonym)H2BFAiii
Other aliasH2B/S
H2BK
HGNC (Hugo) HIST1H2BK
LocusID (NCBI) 85236
Atlas_Id 64298
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27146361 and ends at 27146858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BK (6p22.1) / FAM134C (17q21.2)HIST1H2BK (6p22.1) / HSP90AA1 (14q32.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BK   13954
Cards
Entrez_Gene (NCBI)HIST1H2BK  85236  histone cluster 1 H2B family member k
AliasesH2B/S; H2BFAiii; H2BFT; H2BK
GeneCards (Weizmann)HIST1H2BK
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:27146361-27146858 [Contig_View]  HIST1H2BK [Vega]
TCGA cBioPortalHIST1H2BK
AceView (NCBI)HIST1H2BK
Genatlas (Paris)HIST1H2BK
WikiGenes85236
SOURCE (Princeton)HIST1H2BK
Genetics Home Reference (NIH)HIST1H2BK
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BK  -     chr6:27146361-27146858 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BK  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BK - 6p22.1 [CytoView hg19]  HIST1H2BK - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BK [Mapview hg19]  HIST1H2BK [Mapview hg38]
OMIM615045   
Gene and transcription
Genbank (Entrez)AJ223352 AK292062 BC000893 BC051872 BC064959
RefSeq transcript (Entrez)NM_001312653 NM_080593
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BK
Cluster EST : UnigeneHs.689116 [ NCBI ]
CGAP (NCI)Hs.689116
Gene ExpressionHIST1H2BK [ NCBI-GEO ]   HIST1H2BK [ EBI - ARRAY_EXPRESS ]   HIST1H2BK [ SEEK ]   HIST1H2BK [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85236
GTEX Portal (Tissue expression)HIST1H2BK
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60814   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60814  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60814
Splice isoforms : SwissVarO60814
PhosPhoSitePlusO60814
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BK
DMDM Disease mutations85236
Blocks (Seattle)HIST1H2BK
PDB (SRS)2CV5   
PDB (PDBSum)2CV5   
PDB (IMB)2CV5   
PDB (RSDB)2CV5   
Structural Biology KnowledgeBase2CV5   
SCOP (Structural Classification of Proteins)2CV5   
CATH (Classification of proteins structures)2CV5   
SuperfamilyO60814
Peptide AtlasO60814
HPRD13658
IPIIPI00419833   
Protein Interaction databases
DIP (DOE-UCLA)O60814
IntAct (EBI)O60814
BioGRIDHIST1H2BK
STRING (EMBL)HIST1H2BK
ZODIACHIST1H2BK
Ontologies - Pathways
QuickGOO60814
Ontology : AmiGO###############################################################################################################################################################################################################################################################                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                            
NDEx NetworkHIST1H2BK
Atlas of Cancer Signalling NetworkHIST1H2BK
Wikipedia pathwaysHIST1H2BK
Orthology - Evolution
OrthoDB85236
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BK
HOVERGENO60814
HOGENOMO60814
Homologs : HomoloGeneHIST1H2BK
Homology/Alignments : Family Browser (UCSC)HIST1H2BK
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BK
dbVarHIST1H2BK
ClinVarHIST1H2BK
1000_GenomesHIST1H2BK 
Exome Variant ServerHIST1H2BK
Genetic variants : HAPMAP85236
Genomic Variants (DGV)HIST1H2BK [DGVbeta]
DECIPHERHIST1H2BK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BK 
Mutations
ICGC Data PortalHIST1H2BK 
TCGA Data PortalHIST1H2BK 
Broad Tumor PortalHIST1H2BK
OASIS PortalHIST1H2BK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BK
DgiDB (Drug Gene Interaction Database)HIST1H2BK
DoCM (Curated mutations)HIST1H2BK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BK (select a term)
intoGenHIST1H2BK
Cancer3DHIST1H2BK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615045   
Orphanet
DisGeNETHIST1H2BK
MedgenHIST1H2BK
Genetic Testing Registry HIST1H2BK
NextProtO60814 [Medical]
TSGene85236
GENETestsHIST1H2BK
Target ValidationHIST1H2BK
Huge Navigator HIST1H2BK [HugePedia]
snp3D : Map Gene to Disease85236
BioCentury BCIQHIST1H2BK
ClinGenHIST1H2BK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85236
Chemical/Pharm GKB GenePA134955134
Clinical trialHIST1H2BK
Miscellaneous
canSAR (ICR)HIST1H2BK (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BK
EVEXHIST1H2BK
GoPubMedHIST1H2BK
iHOPHIST1H2BK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:19 CET 2018

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