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HIST1H2BL (histone cluster 1 H2B family member l)

Identity

Alias_namesH2BFC
H2B histone family, member C
histone 1, H2bl
histone cluster 1, H2bl
Alias_symbol (synonym)H2B/c
dJ97D16.4
Other alias
HGNC (Hugo) HIST1H2BL
LocusID (NCBI) 8340
Atlas_Id 64299
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27807479 and ends at 27807931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BL   4748
Cards
Entrez_Gene (NCBI)HIST1H2BL  8340  histone cluster 1 H2B family member l
AliasesH2B/c; H2BFC; dJ97D16.4
GeneCards (Weizmann)HIST1H2BL
Ensembl hg19 (Hinxton)ENSG00000185130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185130 [Gene_View]  ENSG00000185130 [Sequence]  chr6:27807479-27807931 [Contig_View]  HIST1H2BL [Vega]
ICGC DataPortalENSG00000185130
TCGA cBioPortalHIST1H2BL
AceView (NCBI)HIST1H2BL
Genatlas (Paris)HIST1H2BL
WikiGenes8340
SOURCE (Princeton)HIST1H2BL
Genetics Home Reference (NIH)HIST1H2BL
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BL  -     chr6:27807479-27807931 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BL  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BL - 6p22.1 [CytoView hg19]  HIST1H2BL - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BL [Mapview hg19]  HIST1H2BL [Mapview hg38]
OMIM602800   
Gene and transcription
Genbank (Entrez)AK312114 BC093759 BC093761 EU446971
RefSeq transcript (Entrez)NM_003519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BL
Cluster EST : UnigeneHs.137594 [ NCBI ]
CGAP (NCI)Hs.137594
Alternative Splicing GalleryENSG00000185130
Gene ExpressionHIST1H2BL [ NCBI-GEO ]   HIST1H2BL [ EBI - ARRAY_EXPRESS ]   HIST1H2BL [ SEEK ]   HIST1H2BL [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8340
GTEX Portal (Tissue expression)HIST1H2BL
Human Protein AtlasENSG00000185130-HIST1H2BL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99880
Splice isoforms : SwissVarQ99880
PhosPhoSitePlusQ99880
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BL
DMDM Disease mutations8340
Blocks (Seattle)HIST1H2BL
SuperfamilyQ99880
Human Protein Atlas [tissue]ENSG00000185130-HIST1H2BL [tissue]
Peptide AtlasQ99880
HPRD11898
IPIIPI00018534   
Protein Interaction databases
DIP (DOE-UCLA)Q99880
IntAct (EBI)Q99880
FunCoupENSG00000185130
BioGRIDHIST1H2BL
STRING (EMBL)HIST1H2BL
ZODIACHIST1H2BL
Ontologies - Pathways
QuickGOQ99880
Ontology : AmiGOnucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2BL
Atlas of Cancer Signalling NetworkHIST1H2BL
Wikipedia pathwaysHIST1H2BL
Orthology - Evolution
OrthoDB8340
GeneTree (enSembl)ENSG00000185130
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BL
HOVERGENQ99880
HOGENOMQ99880
Homologs : HomoloGeneHIST1H2BL
Homology/Alignments : Family Browser (UCSC)HIST1H2BL
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BL
dbVarHIST1H2BL
ClinVarHIST1H2BL
1000_GenomesHIST1H2BL 
Exome Variant ServerHIST1H2BL
ExAC (Exome Aggregation Consortium)ENSG00000185130
GNOMAD BrowserENSG00000185130
Varsome BrowserHIST1H2BL
Genetic variants : HAPMAP8340
Genomic Variants (DGV)HIST1H2BL [DGVbeta]
DECIPHERHIST1H2BL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BL 
Mutations
ICGC Data PortalHIST1H2BL 
TCGA Data PortalHIST1H2BL 
Broad Tumor PortalHIST1H2BL
OASIS PortalHIST1H2BL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BL
DgiDB (Drug Gene Interaction Database)HIST1H2BL
DoCM (Curated mutations)HIST1H2BL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BL (select a term)
intoGenHIST1H2BL
Cancer3DHIST1H2BL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602800   
Orphanet
DisGeNETHIST1H2BL
MedgenHIST1H2BL
Genetic Testing Registry HIST1H2BL
NextProtQ99880 [Medical]
TSGene8340
GENETestsHIST1H2BL
Target ValidationHIST1H2BL
Huge Navigator HIST1H2BL [HugePedia]
snp3D : Map Gene to Disease8340
BioCentury BCIQHIST1H2BL
ClinGenHIST1H2BL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8340
Chemical/Pharm GKB GenePA29123
Clinical trialHIST1H2BL
Miscellaneous
canSAR (ICR)HIST1H2BL (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BL
EVEXHIST1H2BL
GoPubMedHIST1H2BL
iHOPHIST1H2BL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:57 CEST 2018

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