Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HIST1H2BM (histone cluster 1 H2B family member m)

Identity

Alias_namesH2BFE
H2B histone family, member E
histone 1, H2bm
histone cluster 1, H2bm
Alias_symbol (synonym)H2B/e
dJ160A22.3
Other alias
HGNC (Hugo) HIST1H2BM
LocusID (NCBI) 8342
Atlas_Id 64300
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27815044 and ends at 27815489 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BM   4750
Cards
Entrez_Gene (NCBI)HIST1H2BM  8342  histone cluster 1 H2B family member m
AliasesH2B/e; H2BFE; dJ160A22.3
GeneCards (Weizmann)HIST1H2BM
Ensembl hg19 (Hinxton)ENSG00000273703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273703 [Gene_View]  ENSG00000273703 [Sequence]  chr6:27815044-27815489 [Contig_View]  HIST1H2BM [Vega]
ICGC DataPortalENSG00000273703
TCGA cBioPortalHIST1H2BM
AceView (NCBI)HIST1H2BM
Genatlas (Paris)HIST1H2BM
WikiGenes8342
SOURCE (Princeton)HIST1H2BM
Genetics Home Reference (NIH)HIST1H2BM
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BM  -     chr6:27815044-27815489 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BM  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BM - 6p22.1 [CytoView hg19]  HIST1H2BM - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BM [Mapview hg19]  HIST1H2BM [Mapview hg38]
OMIM602802   
Gene and transcription
Genbank (Entrez)BC066244 BC067485 BC067486 BC067487 BC067488
RefSeq transcript (Entrez)NM_003521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BM
Cluster EST : UnigeneHs.182432 [ NCBI ]
CGAP (NCI)Hs.182432
Alternative Splicing GalleryENSG00000273703
Gene ExpressionHIST1H2BM [ NCBI-GEO ]   HIST1H2BM [ EBI - ARRAY_EXPRESS ]   HIST1H2BM [ SEEK ]   HIST1H2BM [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8342
GTEX Portal (Tissue expression)HIST1H2BM
Human Protein AtlasENSG00000273703-HIST1H2BM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99879   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99879  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99879
Splice isoforms : SwissVarQ99879
PhosPhoSitePlusQ99879
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BM
DMDM Disease mutations8342
Blocks (Seattle)HIST1H2BM
SuperfamilyQ99879
Human Protein Atlas [tissue]ENSG00000273703-HIST1H2BM [tissue]
Peptide AtlasQ99879
HPRD04154
IPIIPI00554798   
Protein Interaction databases
DIP (DOE-UCLA)Q99879
IntAct (EBI)Q99879
FunCoupENSG00000273703
BioGRIDHIST1H2BM
STRING (EMBL)HIST1H2BM
ZODIACHIST1H2BM
Ontologies - Pathways
QuickGOQ99879
Ontology : AmiGOnucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST1H2BM
Atlas of Cancer Signalling NetworkHIST1H2BM
Wikipedia pathwaysHIST1H2BM
Orthology - Evolution
OrthoDB8342
GeneTree (enSembl)ENSG00000273703
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BM
HOVERGENQ99879
HOGENOMQ99879
Homologs : HomoloGeneHIST1H2BM
Homology/Alignments : Family Browser (UCSC)HIST1H2BM
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BM
dbVarHIST1H2BM
ClinVarHIST1H2BM
1000_GenomesHIST1H2BM 
Exome Variant ServerHIST1H2BM
ExAC (Exome Aggregation Consortium)ENSG00000273703
GNOMAD BrowserENSG00000273703
Varsome BrowserHIST1H2BM
Genetic variants : HAPMAP8342
Genomic Variants (DGV)HIST1H2BM [DGVbeta]
DECIPHERHIST1H2BM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BM 
Mutations
ICGC Data PortalHIST1H2BM 
TCGA Data PortalHIST1H2BM 
Broad Tumor PortalHIST1H2BM
OASIS PortalHIST1H2BM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BM
DgiDB (Drug Gene Interaction Database)HIST1H2BM
DoCM (Curated mutations)HIST1H2BM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BM (select a term)
intoGenHIST1H2BM
Cancer3DHIST1H2BM(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602802   
Orphanet
DisGeNETHIST1H2BM
MedgenHIST1H2BM
Genetic Testing Registry HIST1H2BM
NextProtQ99879 [Medical]
TSGene8342
GENETestsHIST1H2BM
Target ValidationHIST1H2BM
Huge Navigator HIST1H2BM [HugePedia]
snp3D : Map Gene to Disease8342
BioCentury BCIQHIST1H2BM
ClinGenHIST1H2BM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8342
Chemical/Pharm GKB GenePA29125
Clinical trialHIST1H2BM
Miscellaneous
canSAR (ICR)HIST1H2BM (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BM
EVEXHIST1H2BM
GoPubMedHIST1H2BM
iHOPHIST1H2BM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:57 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.