Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HIST1H2BN (histone cluster 1 H2B family member n)

Identity

Alias_namesH2BFD
H2B histone family, member D
histone 1, H2bn
histone cluster 1, H2bn
Alias_symbol (synonym)H2B/d
Other alias
HGNC (Hugo) HIST1H2BN
LocusID (NCBI) 8341
Atlas_Id 54974
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27838662 and ends at 27839110 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H2BN   4749
Cards
Entrez_Gene (NCBI)HIST1H2BN  8341  histone cluster 1 H2B family member n
AliasesH2B/d; H2BFD
GeneCards (Weizmann)HIST1H2BN
Ensembl hg19 (Hinxton)ENSG00000233822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233822 [Gene_View]  ENSG00000233822 [Sequence]  chr6:27838662-27839110 [Contig_View]  HIST1H2BN [Vega]
ICGC DataPortalENSG00000233822
TCGA cBioPortalHIST1H2BN
AceView (NCBI)HIST1H2BN
Genatlas (Paris)HIST1H2BN
WikiGenes8341
SOURCE (Princeton)HIST1H2BN
Genetics Home Reference (NIH)HIST1H2BN
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H2BN  -     chr6:27838662-27839110 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H2BN  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H2BN - 6p22.1 [CytoView hg19]  HIST1H2BN - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H2BN [Mapview hg19]  HIST1H2BN [Mapview hg38]
OMIM602801   
Gene and transcription
Genbank (Entrez)AK312228 BC009783 BC011372 BC101411 BC101412
RefSeq transcript (Entrez)NM_003520
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H2BN
Cluster EST : UnigeneHs.673851 [ NCBI ]
CGAP (NCI)Hs.673851
Alternative Splicing GalleryENSG00000233822
Gene ExpressionHIST1H2BN [ NCBI-GEO ]   HIST1H2BN [ EBI - ARRAY_EXPRESS ]   HIST1H2BN [ SEEK ]   HIST1H2BN [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H2BN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8341
GTEX Portal (Tissue expression)HIST1H2BN
Human Protein AtlasENSG00000233822-HIST1H2BN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99877   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99877  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99877
Splice isoforms : SwissVarQ99877
PhosPhoSitePlusQ99877
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST1H2BN
DMDM Disease mutations8341
Blocks (Seattle)HIST1H2BN
SuperfamilyQ99877
Human Protein Atlas [tissue]ENSG00000233822-HIST1H2BN [tissue]
Peptide AtlasQ99877
HPRD11899
IPIIPI00794461   
Protein Interaction databases
DIP (DOE-UCLA)Q99877
IntAct (EBI)Q99877
FunCoupENSG00000233822
BioGRIDHIST1H2BN
STRING (EMBL)HIST1H2BN
ZODIACHIST1H2BN
Ontologies - Pathways
QuickGOQ99877
Ontology : AmiGOnucleosome  DNA binding  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkHIST1H2BN
Atlas of Cancer Signalling NetworkHIST1H2BN
Wikipedia pathwaysHIST1H2BN
Orthology - Evolution
OrthoDB8341
GeneTree (enSembl)ENSG00000233822
Phylogenetic Trees/Animal Genes : TreeFamHIST1H2BN
HOVERGENQ99877
HOGENOMQ99877
Homologs : HomoloGeneHIST1H2BN
Homology/Alignments : Family Browser (UCSC)HIST1H2BN
Gene fusions - Rearrangements
Fusion : QuiverHIST1H2BN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H2BN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H2BN
dbVarHIST1H2BN
ClinVarHIST1H2BN
1000_GenomesHIST1H2BN 
Exome Variant ServerHIST1H2BN
ExAC (Exome Aggregation Consortium)ENSG00000233822
GNOMAD BrowserENSG00000233822
Varsome BrowserHIST1H2BN
Genetic variants : HAPMAP8341
Genomic Variants (DGV)HIST1H2BN [DGVbeta]
DECIPHERHIST1H2BN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H2BN 
Mutations
ICGC Data PortalHIST1H2BN 
TCGA Data PortalHIST1H2BN 
Broad Tumor PortalHIST1H2BN
OASIS PortalHIST1H2BN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H2BN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H2BN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H2BN
DgiDB (Drug Gene Interaction Database)HIST1H2BN
DoCM (Curated mutations)HIST1H2BN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H2BN (select a term)
intoGenHIST1H2BN
Cancer3DHIST1H2BN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602801   
Orphanet
DisGeNETHIST1H2BN
MedgenHIST1H2BN
Genetic Testing Registry HIST1H2BN
NextProtQ99877 [Medical]
TSGene8341
GENETestsHIST1H2BN
Target ValidationHIST1H2BN
Huge Navigator HIST1H2BN [HugePedia]
snp3D : Map Gene to Disease8341
BioCentury BCIQHIST1H2BN
ClinGenHIST1H2BN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8341
Chemical/Pharm GKB GenePA29124
Clinical trialHIST1H2BN
Miscellaneous
canSAR (ICR)HIST1H2BN (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H2BN
EVEXHIST1H2BN
GoPubMedHIST1H2BN
iHOPHIST1H2BN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:26:59 CEST 2018

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