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HIST1H3C (histone cluster 1 H3 family member c)

Identity

Alias_namesH3FC
H3 histone family, member C
histone 1, H3c
histone cluster 1, H3c
Alias_symbol (synonym)H3/c
H3.1
Other alias
HGNC (Hugo) HIST1H3C
LocusID (NCBI) 8352
Atlas_Id 64304
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26045411 and ends at 26045869 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3C   4768
Cards
Entrez_Gene (NCBI)HIST1H3C  8352  histone cluster 1 H3 family member c
AliasesH3.1; H3/c; H3FC
GeneCards (Weizmann)HIST1H3C
Ensembl hg19 (Hinxton)ENSG00000278272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278272 [Gene_View]  chr6:26045411-26045869 [Contig_View]  HIST1H3C [Vega]
ICGC DataPortalENSG00000278272
TCGA cBioPortalHIST1H3C
AceView (NCBI)HIST1H3C
Genatlas (Paris)HIST1H3C
WikiGenes8352
SOURCE (Princeton)HIST1H3C
Genetics Home Reference (NIH)HIST1H3C
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3C  -     chr6:26045411-26045869 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3C  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3C - 6p22.2 [CytoView hg19]  HIST1H3C - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3C [Mapview hg19]  HIST1H3C [Mapview hg38]
OMIM602812   
Gene and transcription
Genbank (Entrez)BC058834 BC127610 BC160079
RefSeq transcript (Entrez)NM_003531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3C
Cluster EST : UnigeneHs.248176 [ NCBI ]
CGAP (NCI)Hs.248176
Alternative Splicing GalleryENSG00000278272
Gene ExpressionHIST1H3C [ NCBI-GEO ]   HIST1H3C [ EBI - ARRAY_EXPRESS ]   HIST1H3C [ SEEK ]   HIST1H3C [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8352
GTEX Portal (Tissue expression)HIST1H3C
Human Protein AtlasENSG00000278272-HIST1H3C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3C
DMDM Disease mutations8352
Blocks (Seattle)HIST1H3C
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000278272-HIST1H3C [tissue]
Peptide AtlasP68431
HPRD11906
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000278272
BioGRIDHIST1H3C
STRING (EMBL)HIST1H3C
ZODIACHIST1H3C
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3C
Atlas of Cancer Signalling NetworkHIST1H3C
Wikipedia pathwaysHIST1H3C
Orthology - Evolution
OrthoDB8352
GeneTree (enSembl)ENSG00000278272
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3C
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3C
Homology/Alignments : Family Browser (UCSC)HIST1H3C
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3C
dbVarHIST1H3C
ClinVarHIST1H3C
1000_GenomesHIST1H3C 
Exome Variant ServerHIST1H3C
ExAC (Exome Aggregation Consortium)ENSG00000278272
GNOMAD BrowserENSG00000278272
Genetic variants : HAPMAP8352
Genomic Variants (DGV)HIST1H3C [DGVbeta]
DECIPHERHIST1H3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3C 
Mutations
ICGC Data PortalHIST1H3C 
TCGA Data PortalHIST1H3C 
Broad Tumor PortalHIST1H3C
OASIS PortalHIST1H3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3C
DgiDB (Drug Gene Interaction Database)HIST1H3C
DoCM (Curated mutations)HIST1H3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3C (select a term)
intoGenHIST1H3C
Cancer3DHIST1H3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602812   
Orphanet
DisGeNETHIST1H3C
MedgenHIST1H3C
Genetic Testing Registry HIST1H3C
NextProtP68431 [Medical]
TSGene8352
GENETestsHIST1H3C
Target ValidationHIST1H3C
Huge Navigator HIST1H3C [HugePedia]
snp3D : Map Gene to Disease8352
BioCentury BCIQHIST1H3C
ClinGenHIST1H3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8352
Chemical/Pharm GKB GenePA29143
Clinical trialHIST1H3C
Miscellaneous
canSAR (ICR)HIST1H3C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3C
EVEXHIST1H3C
GoPubMedHIST1H3C
iHOPHIST1H3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:19 CET 2018

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