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HIST1H3D (histone cluster 1 H3 family member d)

Identity

Alias_namesH3FB
H3 histone family, member B
histone 1, H3d
histone cluster 1, H3d
Alias_symbol (synonym)H3/b
Other alias
HGNC (Hugo) HIST1H3D
LocusID (NCBI) 8351
Atlas_Id 54075
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26196784 and ends at 26199293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3D   4767
Cards
Entrez_Gene (NCBI)HIST1H3D  8351  histone cluster 1 H3 family member d
AliasesH3/b; H3FB
GeneCards (Weizmann)HIST1H3D
Ensembl hg19 (Hinxton)ENSG00000197409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197409 [Gene_View]  ENSG00000197409 [Sequence]  chr6:26196784-26199293 [Contig_View]  HIST1H3D [Vega]
ICGC DataPortalENSG00000197409
TCGA cBioPortalHIST1H3D
AceView (NCBI)HIST1H3D
Genatlas (Paris)HIST1H3D
WikiGenes8351
SOURCE (Princeton)HIST1H3D
Genetics Home Reference (NIH)HIST1H3D
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3D  -     chr6:26196784-26199293 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3D  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3D - 6p22.2 [CytoView hg19]  HIST1H3D - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3D [Mapview hg19]  HIST1H3D [Mapview hg38]
OMIM602811   
Gene and transcription
Genbank (Entrez)AK316611 BC031333 BQ051491 DB242999
RefSeq transcript (Entrez)NM_003530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3D
Cluster EST : UnigeneHs.626666 [ NCBI ]
CGAP (NCI)Hs.626666
Alternative Splicing GalleryENSG00000197409
Gene ExpressionHIST1H3D [ NCBI-GEO ]   HIST1H3D [ EBI - ARRAY_EXPRESS ]   HIST1H3D [ SEEK ]   HIST1H3D [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8351
GTEX Portal (Tissue expression)HIST1H3D
Human Protein AtlasENSG00000197409-HIST1H3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3D
DMDM Disease mutations8351
Blocks (Seattle)HIST1H3D
PDB (SRS)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
PDB (PDBSum)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
PDB (IMB)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
PDB (RSDB)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
Structural Biology KnowledgeBase1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
SCOP (Structural Classification of Proteins)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
CATH (Classification of proteins structures)1CS9    1CT6    1O9S    1Q3L    2B2T    2B2U    2B2V    2B2W    2C1J    2C1N    2CV5    2KWJ    2KWK    2L75    2LBM    2M0O    2NDF    2NDG    2OQ6    2OT7    2OX0    2RI7    2UXN    2VPG    2X0L    3A1B    3AFA    3AVR    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3B95    3KMT    3KQI    3LQI    3LQJ    3O34    3O35    3O37    3QJ6    3RIG    3RIY    3SOU    3SOW    3U31    3U3D    3U4S    3U5N    3U5O    3U5P    3UEE    3UEF    3UIG    3UII    3UIK    3V43    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3X1S    3X1T    3X1U    3X1V    3ZG6    3ZVY    4A0J    4A0N    4A7J    4BD3    4C1Q    4F4U    4F56    4FWF    4HON    4I51    4L7X    4LK9    4LKA    4LLB    4LXL    4N4H    4QBQ    4QBR    4QBS    4TN7    4U68    4UP0    4UY4    4X3K    4YHP    4YHZ    4YM5    4YM6    4Z0R    4Z2M    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5B24    5B2I    5B2J    5B31    5C11    5C13    5C3I    5CH1    5CH2    5CPI    5CPJ    5CPK    5D6Y    5DAH    5FB0    5FB1    5FFV    5HJB    5HJC    5HJD    5HYN    5IQL    5J3V    5JHN    5JIN    5JIY    5JJ0    5SVX    5SVY    5T0K    5T0M    5T1G    5T1I    5TBN    5TDR    5TDW   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000197409-HIST1H3D [tissue]
Peptide AtlasP68431
HPRD11905
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000197409
BioGRIDHIST1H3D
STRING (EMBL)HIST1H3D
ZODIACHIST1H3D
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGOchromatin silencing at rDNA  nuclear chromosome  nucleosome  nucleosome  nuclear nucleosome  protein binding  extracellular region  nucleus  nucleus  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  nucleosome assembly  nucleosome assembly  DNA replication-dependent nucleosome assembly  blood coagulation  membrane  nucleosomal DNA binding  telomere organization  interleukin-7-mediated signaling pathway  protein complex  cellular protein metabolic process  cadherin binding  regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  positive regulation of gene expression, epigenetic  protein heterodimerization activity  protein heterotetramerization  regulation of gene silencing by miRNA  regulation of gene silencing  extracellular exosome  regulation of hematopoietic stem cell differentiation  
Ontology : EGO-EBIchromatin silencing at rDNA  nuclear chromosome  nucleosome  nucleosome  nuclear nucleosome  protein binding  extracellular region  nucleus  nucleus  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  nucleosome assembly  nucleosome assembly  DNA replication-dependent nucleosome assembly  blood coagulation  membrane  nucleosomal DNA binding  telomere organization  interleukin-7-mediated signaling pathway  protein complex  cellular protein metabolic process  cadherin binding  regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  positive regulation of gene expression, epigenetic  protein heterodimerization activity  protein heterotetramerization  regulation of gene silencing by miRNA  regulation of gene silencing  extracellular exosome  regulation of hematopoietic stem cell differentiation  
NDEx NetworkHIST1H3D
Atlas of Cancer Signalling NetworkHIST1H3D
Wikipedia pathwaysHIST1H3D
Orthology - Evolution
OrthoDB8351
GeneTree (enSembl)ENSG00000197409
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3D
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3D
Homology/Alignments : Family Browser (UCSC)HIST1H3D
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3D
dbVarHIST1H3D
ClinVarHIST1H3D
1000_GenomesHIST1H3D 
Exome Variant ServerHIST1H3D
ExAC (Exome Aggregation Consortium)ENSG00000197409
GNOMAD BrowserENSG00000197409
Genetic variants : HAPMAP8351
Genomic Variants (DGV)HIST1H3D [DGVbeta]
DECIPHERHIST1H3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3D 
Mutations
ICGC Data PortalHIST1H3D 
TCGA Data PortalHIST1H3D 
Broad Tumor PortalHIST1H3D
OASIS PortalHIST1H3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3D
DgiDB (Drug Gene Interaction Database)HIST1H3D
DoCM (Curated mutations)HIST1H3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3D (select a term)
intoGenHIST1H3D
Cancer3DHIST1H3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602811   
Orphanet
DisGeNETHIST1H3D
MedgenHIST1H3D
Genetic Testing Registry HIST1H3D
NextProtP68431 [Medical]
TSGene8351
GENETestsHIST1H3D
Target ValidationHIST1H3D
Huge Navigator HIST1H3D [HugePedia]
snp3D : Map Gene to Disease8351
BioCentury BCIQHIST1H3D
ClinGenHIST1H3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8351
Chemical/Pharm GKB GenePA29142
Clinical trialHIST1H3D
Miscellaneous
canSAR (ICR)HIST1H3D (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3D
EVEXHIST1H3D
GoPubMedHIST1H3D
iHOPHIST1H3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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