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HIST1H3E (histone cluster 1 H3 family member e)

Identity

Alias_namesH3FD
H3 histone family, member D
histone 1, H3e
histone cluster 1, H3e
Alias_symbol (synonym)H3/d
H3.1
Other alias
HGNC (Hugo) HIST1H3E
LocusID (NCBI) 8353
Atlas_Id 64305
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26225155 and ends at 26225616 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3E   4769
Cards
Entrez_Gene (NCBI)HIST1H3E  8353  histone cluster 1 H3 family member e
AliasesH3.1; H3/d; H3FD
GeneCards (Weizmann)HIST1H3E
Ensembl hg19 (Hinxton)ENSG00000274750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274750 [Gene_View]  chr6:26225155-26225616 [Contig_View]  HIST1H3E [Vega]
ICGC DataPortalENSG00000274750
TCGA cBioPortalHIST1H3E
AceView (NCBI)HIST1H3E
Genatlas (Paris)HIST1H3E
WikiGenes8353
SOURCE (Princeton)HIST1H3E
Genetics Home Reference (NIH)HIST1H3E
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3E  -     chr6:26225155-26225616 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3E  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3E - 6p22.2 [CytoView hg19]  HIST1H3E - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3E [Mapview hg19]  HIST1H3E [Mapview hg38]
OMIM602813   
Gene and transcription
Genbank (Entrez)CR542014 EU446973
RefSeq transcript (Entrez)NM_003532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3E
Cluster EST : UnigeneHs.586261 [ NCBI ]
CGAP (NCI)Hs.586261
Alternative Splicing GalleryENSG00000274750
Gene ExpressionHIST1H3E [ NCBI-GEO ]   HIST1H3E [ EBI - ARRAY_EXPRESS ]   HIST1H3E [ SEEK ]   HIST1H3E [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8353
GTEX Portal (Tissue expression)HIST1H3E
Human Protein AtlasENSG00000274750-HIST1H3E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3E
DMDM Disease mutations8353
Blocks (Seattle)HIST1H3E
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000274750-HIST1H3E [tissue]
Peptide AtlasP68431
HPRD11907
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000274750
BioGRIDHIST1H3E
STRING (EMBL)HIST1H3E
ZODIACHIST1H3E
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3E
Atlas of Cancer Signalling NetworkHIST1H3E
Wikipedia pathwaysHIST1H3E
Orthology - Evolution
OrthoDB8353
GeneTree (enSembl)ENSG00000274750
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3E
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3E
Homology/Alignments : Family Browser (UCSC)HIST1H3E
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3E
dbVarHIST1H3E
ClinVarHIST1H3E
1000_GenomesHIST1H3E 
Exome Variant ServerHIST1H3E
ExAC (Exome Aggregation Consortium)ENSG00000274750
GNOMAD BrowserENSG00000274750
Genetic variants : HAPMAP8353
Genomic Variants (DGV)HIST1H3E [DGVbeta]
DECIPHERHIST1H3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3E 
Mutations
ICGC Data PortalHIST1H3E 
TCGA Data PortalHIST1H3E 
Broad Tumor PortalHIST1H3E
OASIS PortalHIST1H3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3E
DgiDB (Drug Gene Interaction Database)HIST1H3E
DoCM (Curated mutations)HIST1H3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3E (select a term)
intoGenHIST1H3E
Cancer3DHIST1H3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602813   
Orphanet
DisGeNETHIST1H3E
MedgenHIST1H3E
Genetic Testing Registry HIST1H3E
NextProtP68431 [Medical]
TSGene8353
GENETestsHIST1H3E
Target ValidationHIST1H3E
Huge Navigator HIST1H3E [HugePedia]
snp3D : Map Gene to Disease8353
BioCentury BCIQHIST1H3E
ClinGenHIST1H3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8353
Chemical/Pharm GKB GenePA29144
Clinical trialHIST1H3E
Miscellaneous
canSAR (ICR)HIST1H3E (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3E
EVEXHIST1H3E
GoPubMedHIST1H3E
iHOPHIST1H3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:20 CET 2018

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