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HIST1H3F (histone cluster 1 H3 family member f)

Identity

Alias_namesH3FI
H3 histone family, member I
histone 1, H3f
histone cluster 1, H3f
Alias_symbol (synonym)H3/i
Other alias
HGNC (Hugo) HIST1H3F
LocusID (NCBI) 8968
Atlas_Id 64306
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26250142 and ends at 26250607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H3F (6p22.2) / HNRNPM (19p13.2)HIST1H3F (6p22.2) / TACC2 (10q26.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3F   4773
Cards
Entrez_Gene (NCBI)HIST1H3F  8968  histone cluster 1 H3 family member f
AliasesH3/i; H3FI
GeneCards (Weizmann)HIST1H3F
Ensembl hg19 (Hinxton)ENSG00000277775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277775 [Gene_View]  ENSG00000277775 [Sequence]  chr6:26250142-26250607 [Contig_View]  HIST1H3F [Vega]
ICGC DataPortalENSG00000277775
TCGA cBioPortalHIST1H3F
AceView (NCBI)HIST1H3F
Genatlas (Paris)HIST1H3F
WikiGenes8968
SOURCE (Princeton)HIST1H3F
Genetics Home Reference (NIH)HIST1H3F
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3F  -     chr6:26250142-26250607 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3F  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3F - 6p22.2 [CytoView hg19]  HIST1H3F - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3F [Mapview hg19]  HIST1H3F [Mapview hg38]
OMIM602816   
Gene and transcription
Genbank (Entrez)AK314142 BC062305 BC067492 BC069818 BC096131
RefSeq transcript (Entrez)NM_021018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3F
Cluster EST : UnigeneHs.247814 [ NCBI ]
CGAP (NCI)Hs.247814
Alternative Splicing GalleryENSG00000277775
Gene ExpressionHIST1H3F [ NCBI-GEO ]   HIST1H3F [ EBI - ARRAY_EXPRESS ]   HIST1H3F [ SEEK ]   HIST1H3F [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8968
GTEX Portal (Tissue expression)HIST1H3F
Human Protein AtlasENSG00000277775-HIST1H3F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3F
DMDM Disease mutations8968
Blocks (Seattle)HIST1H3F
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000277775-HIST1H3F [tissue]
Peptide AtlasP68431
HPRD11910
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000277775
BioGRIDHIST1H3F
STRING (EMBL)HIST1H3F
ZODIACHIST1H3F
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3F
Atlas of Cancer Signalling NetworkHIST1H3F
Wikipedia pathwaysHIST1H3F
Orthology - Evolution
OrthoDB8968
GeneTree (enSembl)ENSG00000277775
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3F
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3F
Homology/Alignments : Family Browser (UCSC)HIST1H3F
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3F
dbVarHIST1H3F
ClinVarHIST1H3F
1000_GenomesHIST1H3F 
Exome Variant ServerHIST1H3F
ExAC (Exome Aggregation Consortium)ENSG00000277775
GNOMAD BrowserENSG00000277775
Varsome BrowserHIST1H3F
Genetic variants : HAPMAP8968
Genomic Variants (DGV)HIST1H3F [DGVbeta]
DECIPHERHIST1H3F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3F 
Mutations
ICGC Data PortalHIST1H3F 
TCGA Data PortalHIST1H3F 
Broad Tumor PortalHIST1H3F
OASIS PortalHIST1H3F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3F
DgiDB (Drug Gene Interaction Database)HIST1H3F
DoCM (Curated mutations)HIST1H3F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3F (select a term)
intoGenHIST1H3F
Cancer3DHIST1H3F(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602816   
Orphanet
DisGeNETHIST1H3F
MedgenHIST1H3F
Genetic Testing Registry HIST1H3F
NextProtP68431 [Medical]
TSGene8968
GENETestsHIST1H3F
Target ValidationHIST1H3F
Huge Navigator HIST1H3F [HugePedia]
snp3D : Map Gene to Disease8968
BioCentury BCIQHIST1H3F
ClinGenHIST1H3F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8968
Chemical/Pharm GKB GenePA29148
Clinical trialHIST1H3F
Miscellaneous
canSAR (ICR)HIST1H3F (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3F
EVEXHIST1H3F
GoPubMedHIST1H3F
iHOPHIST1H3F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:58 CEST 2018

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