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HIST1H3H (histone cluster 1 H3 family member h)

Identity

Alias_namesH3FK
H3 histone family, member K
histone 1, H3h
histone cluster 1, H3h
Alias_symbol (synonym)H3/k
H3F1K
Other alias
HGNC (Hugo) HIST1H3H
LocusID (NCBI) 8357
Atlas_Id 64308
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27810064 and ends at 27810536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3H   4775
Cards
Entrez_Gene (NCBI)HIST1H3H  8357  histone cluster 1 H3 family member h
AliasesH3/k; H3F1K; H3FK
GeneCards (Weizmann)HIST1H3H
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:27810064-27810536 [Contig_View]  HIST1H3H [Vega]
TCGA cBioPortalHIST1H3H
AceView (NCBI)HIST1H3H
Genatlas (Paris)HIST1H3H
WikiGenes8357
SOURCE (Princeton)HIST1H3H
Genetics Home Reference (NIH)HIST1H3H
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3H  -     chr6:27810064-27810536 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3H  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3H - 6p22.1 [CytoView hg19]  HIST1H3H - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3H [Mapview hg19]  HIST1H3H [Mapview hg38]
OMIM602818   
Gene and transcription
Genbank (Entrez)AK311991 BC007518 BC096128 BC096129 BC096130
RefSeq transcript (Entrez)NM_003536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3H
Cluster EST : UnigeneHs.591778 [ NCBI ]
CGAP (NCI)Hs.591778
Gene ExpressionHIST1H3H [ NCBI-GEO ]   HIST1H3H [ EBI - ARRAY_EXPRESS ]   HIST1H3H [ SEEK ]   HIST1H3H [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8357
GTEX Portal (Tissue expression)HIST1H3H
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3H
DMDM Disease mutations8357
Blocks (Seattle)HIST1H3H
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Peptide AtlasP68431
HPRD11912
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
BioGRIDHIST1H3H
STRING (EMBL)HIST1H3H
ZODIACHIST1H3H
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3H
Atlas of Cancer Signalling NetworkHIST1H3H
Wikipedia pathwaysHIST1H3H
Orthology - Evolution
OrthoDB8357
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3H
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3H
Homology/Alignments : Family Browser (UCSC)HIST1H3H
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3H
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3H
dbVarHIST1H3H
ClinVarHIST1H3H
1000_GenomesHIST1H3H 
Exome Variant ServerHIST1H3H
Genetic variants : HAPMAP8357
Genomic Variants (DGV)HIST1H3H [DGVbeta]
DECIPHERHIST1H3H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3H 
Mutations
ICGC Data PortalHIST1H3H 
TCGA Data PortalHIST1H3H 
Broad Tumor PortalHIST1H3H
OASIS PortalHIST1H3H [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3H  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3H
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3H
DgiDB (Drug Gene Interaction Database)HIST1H3H
DoCM (Curated mutations)HIST1H3H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3H (select a term)
intoGenHIST1H3H
Cancer3DHIST1H3H(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602818   
Orphanet
DisGeNETHIST1H3H
MedgenHIST1H3H
Genetic Testing Registry HIST1H3H
NextProtP68431 [Medical]
TSGene8357
GENETestsHIST1H3H
Target ValidationHIST1H3H
Huge Navigator HIST1H3H [HugePedia]
snp3D : Map Gene to Disease8357
BioCentury BCIQHIST1H3H
ClinGenHIST1H3H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8357
Chemical/Pharm GKB GenePA29150
Clinical trialHIST1H3H
Miscellaneous
canSAR (ICR)HIST1H3H (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3H
EVEXHIST1H3H
GoPubMedHIST1H3H
iHOPHIST1H3H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:21:20 CET 2018

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