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HIST1H3I (histone cluster 1 H3 family member i)

Identity

Alias_namesH3FF
H3 histone family, member F
histone 1, H3i
histone cluster 1, H3i
Alias_symbol (synonym)H3/f
H3.f
Other alias
HGNC (Hugo) HIST1H3I
LocusID (NCBI) 8354
Atlas_Id 64309
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27871845 and ends at 27872321 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3I   4771
Cards
Entrez_Gene (NCBI)HIST1H3I  8354  histone cluster 1 H3 family member i
AliasesH3.f; H3/f; H3FF
GeneCards (Weizmann)HIST1H3I
Ensembl hg19 (Hinxton)ENSG00000275379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275379 [Gene_View]  chr6:27871845-27872321 [Contig_View]  HIST1H3I [Vega]
ICGC DataPortalENSG00000275379
TCGA cBioPortalHIST1H3I
AceView (NCBI)HIST1H3I
Genatlas (Paris)HIST1H3I
WikiGenes8354
SOURCE (Princeton)HIST1H3I
Genetics Home Reference (NIH)HIST1H3I
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3I  -     chr6:27871845-27872321 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3I  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3I - 6p22.1 [CytoView hg19]  HIST1H3I - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3I [Mapview hg19]  HIST1H3I [Mapview hg38]
OMIM602814   
Gene and transcription
Genbank (Entrez)AK313905 BC066884 BC067493 BC067494 BC069305
RefSeq transcript (Entrez)NM_003533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3I
Cluster EST : UnigeneHs.586261 [ NCBI ]
CGAP (NCI)Hs.586261
Alternative Splicing GalleryENSG00000275379
Gene ExpressionHIST1H3I [ NCBI-GEO ]   HIST1H3I [ EBI - ARRAY_EXPRESS ]   HIST1H3I [ SEEK ]   HIST1H3I [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3I [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8354
GTEX Portal (Tissue expression)HIST1H3I
Human Protein AtlasENSG00000275379-HIST1H3I [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3I
DMDM Disease mutations8354
Blocks (Seattle)HIST1H3I
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000275379-HIST1H3I [tissue]
Peptide AtlasP68431
HPRD11908
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000275379
BioGRIDHIST1H3I
STRING (EMBL)HIST1H3I
ZODIACHIST1H3I
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3I
Atlas of Cancer Signalling NetworkHIST1H3I
Wikipedia pathwaysHIST1H3I
Orthology - Evolution
OrthoDB8354
GeneTree (enSembl)ENSG00000275379
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3I
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3I
Homology/Alignments : Family Browser (UCSC)HIST1H3I
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3I
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3I [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3I
dbVarHIST1H3I
ClinVarHIST1H3I
1000_GenomesHIST1H3I 
Exome Variant ServerHIST1H3I
ExAC (Exome Aggregation Consortium)ENSG00000275379
GNOMAD BrowserENSG00000275379
Genetic variants : HAPMAP8354
Genomic Variants (DGV)HIST1H3I [DGVbeta]
DECIPHERHIST1H3I [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3I 
Mutations
ICGC Data PortalHIST1H3I 
TCGA Data PortalHIST1H3I 
Broad Tumor PortalHIST1H3I
OASIS PortalHIST1H3I [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3I  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3I
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3I
DgiDB (Drug Gene Interaction Database)HIST1H3I
DoCM (Curated mutations)HIST1H3I (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3I (select a term)
intoGenHIST1H3I
Cancer3DHIST1H3I(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602814   
Orphanet
DisGeNETHIST1H3I
MedgenHIST1H3I
Genetic Testing Registry HIST1H3I
NextProtP68431 [Medical]
TSGene8354
GENETestsHIST1H3I
Target ValidationHIST1H3I
Huge Navigator HIST1H3I [HugePedia]
snp3D : Map Gene to Disease8354
BioCentury BCIQHIST1H3I
ClinGenHIST1H3I
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8354
Chemical/Pharm GKB GenePA29146
Clinical trialHIST1H3I
Miscellaneous
canSAR (ICR)HIST1H3I (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3I
EVEXHIST1H3I
GoPubMedHIST1H3I
iHOPHIST1H3I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:21:20 CET 2018

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