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HIST1H3J (histone cluster 1 H3 family member j)

Identity

Alias_namesH3FJ
H3 histone family, member J
histone 1, H3j
histone cluster 1, H3j
Alias_symbol (synonym)H3/j
Other alias
HGNC (Hugo) HIST1H3J
LocusID (NCBI) 8356
Atlas_Id 64310
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27890315 and ends at 27890792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST1H3J   4774
Cards
Entrez_Gene (NCBI)HIST1H3J  8356  histone cluster 1 H3 family member j
AliasesH3/j; H3FJ
GeneCards (Weizmann)HIST1H3J
Ensembl hg19 (Hinxton)ENSG00000197153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197153 [Gene_View]  ENSG00000197153 [Sequence]  chr6:27890315-27890792 [Contig_View]  HIST1H3J [Vega]
ICGC DataPortalENSG00000197153
TCGA cBioPortalHIST1H3J
AceView (NCBI)HIST1H3J
Genatlas (Paris)HIST1H3J
WikiGenes8356
SOURCE (Princeton)HIST1H3J
Genetics Home Reference (NIH)HIST1H3J
Genomic and cartography
GoldenPath hg38 (UCSC)HIST1H3J  -     chr6:27890315-27890792 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST1H3J  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHIST1H3J - 6p22.1 [CytoView hg19]  HIST1H3J - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHIST1H3J [Mapview hg19]  HIST1H3J [Mapview hg38]
OMIM602817   
Gene and transcription
Genbank (Entrez)BC111921 HQ257959
RefSeq transcript (Entrez)NM_003535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST1H3J
Cluster EST : UnigeneHs.484990 [ NCBI ]
CGAP (NCI)Hs.484990
Alternative Splicing GalleryENSG00000197153
Gene ExpressionHIST1H3J [ NCBI-GEO ]   HIST1H3J [ EBI - ARRAY_EXPRESS ]   HIST1H3J [ SEEK ]   HIST1H3J [ MEM ]
Gene Expression Viewer (FireBrowse)HIST1H3J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8356
GTEX Portal (Tissue expression)HIST1H3J
Human Protein AtlasENSG00000197153-HIST1H3J [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP68431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68431
Splice isoforms : SwissVarP68431
PhosPhoSitePlusP68431
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST1H3J
DMDM Disease mutations8356
Blocks (Seattle)HIST1H3J
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP68431
Human Protein Atlas [tissue]ENSG00000197153-HIST1H3J [tissue]
Peptide AtlasP68431
HPRD11911
Protein Interaction databases
DIP (DOE-UCLA)P68431
IntAct (EBI)P68431
FunCoupENSG00000197153
BioGRIDHIST1H3J
STRING (EMBL)HIST1H3J
ZODIACHIST1H3J
Ontologies - Pathways
QuickGOP68431
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHIST1H3J
Atlas of Cancer Signalling NetworkHIST1H3J
Wikipedia pathwaysHIST1H3J
Orthology - Evolution
OrthoDB8356
GeneTree (enSembl)ENSG00000197153
Phylogenetic Trees/Animal Genes : TreeFamHIST1H3J
HOVERGENP68431
HOGENOMP68431
Homologs : HomoloGeneHIST1H3J
Homology/Alignments : Family Browser (UCSC)HIST1H3J
Gene fusions - Rearrangements
Fusion : QuiverHIST1H3J
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST1H3J [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST1H3J
dbVarHIST1H3J
ClinVarHIST1H3J
1000_GenomesHIST1H3J 
Exome Variant ServerHIST1H3J
ExAC (Exome Aggregation Consortium)ENSG00000197153
GNOMAD BrowserENSG00000197153
Varsome BrowserHIST1H3J
Genetic variants : HAPMAP8356
Genomic Variants (DGV)HIST1H3J [DGVbeta]
DECIPHERHIST1H3J [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST1H3J 
Mutations
ICGC Data PortalHIST1H3J 
TCGA Data PortalHIST1H3J 
Broad Tumor PortalHIST1H3J
OASIS PortalHIST1H3J [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST1H3J  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST1H3J
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST1H3J
DgiDB (Drug Gene Interaction Database)HIST1H3J
DoCM (Curated mutations)HIST1H3J (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST1H3J (select a term)
intoGenHIST1H3J
Cancer3DHIST1H3J(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602817   
Orphanet
DisGeNETHIST1H3J
MedgenHIST1H3J
Genetic Testing Registry HIST1H3J
NextProtP68431 [Medical]
TSGene8356
GENETestsHIST1H3J
Target ValidationHIST1H3J
Huge Navigator HIST1H3J [HugePedia]
snp3D : Map Gene to Disease8356
BioCentury BCIQHIST1H3J
ClinGenHIST1H3J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8356
Chemical/Pharm GKB GenePA29149
Clinical trialHIST1H3J
Miscellaneous
canSAR (ICR)HIST1H3J (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST1H3J
EVEXHIST1H3J
GoPubMedHIST1H3J
iHOPHIST1H3J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:59 CEST 2018

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