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HIST2H2AA3 (histone cluster 2 H2A family member a3)

Identity

Alias_namesH2AFO
HIST2H2AA
H2A histone family, member O
histone 2, H2aa
histone 2, H2aa3
histone cluster 2, H2aa3
Alias_symbol (synonym)H2A.2
H2A/q
Other aliasH2A
H2A/O
H2a-615
HGNC (Hugo) HIST2H2AA3
LocusID (NCBI) 8337
Atlas_Id 64319
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149842218 and ends at 149842751 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2AA3   4736
Cards
Entrez_Gene (NCBI)HIST2H2AA3  8337  histone cluster 2 H2A family member a3
AliasesH2A; H2A.2; H2A/O; H2A/q; 
H2AFO; H2a-615; HIST2H2AA
GeneCards (Weizmann)HIST2H2AA3
Ensembl hg19 (Hinxton)ENSG00000203812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203812 [Gene_View]  chr1:149842218-149842751 [Contig_View]  HIST2H2AA3 [Vega]
ICGC DataPortalENSG00000203812
TCGA cBioPortalHIST2H2AA3
AceView (NCBI)HIST2H2AA3
Genatlas (Paris)HIST2H2AA3
WikiGenes8337
SOURCE (Princeton)HIST2H2AA3
Genetics Home Reference (NIH)HIST2H2AA3
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H2AA3  -     chr1:149842218-149842751 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H2AA3  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblHIST2H2AA3 - 1q21.2 [CytoView hg19]  HIST2H2AA3 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2AA3 [Mapview hg19]  HIST2H2AA3 [Mapview hg38]
OMIM142720   
Gene and transcription
Genbank (Entrez)AK312163 BC001629 BC019308 BC096705 BC096739
RefSeq transcript (Entrez)NM_003516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H2AA3
Cluster EST : UnigeneHs.530461 [ NCBI ]
CGAP (NCI)Hs.530461
Alternative Splicing GalleryENSG00000203812
Gene ExpressionHIST2H2AA3 [ NCBI-GEO ]   HIST2H2AA3 [ EBI - ARRAY_EXPRESS ]   HIST2H2AA3 [ SEEK ]   HIST2H2AA3 [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2AA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8337
GTEX Portal (Tissue expression)HIST2H2AA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6FI13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6FI13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6FI13
Splice isoforms : SwissVarQ6FI13
PhosPhoSitePlusQ6FI13
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST2H2AA3
DMDM Disease mutations8337
Blocks (Seattle)HIST2H2AA3
SuperfamilyQ6FI13
Human Protein AtlasENSG00000203812
Peptide AtlasQ6FI13
HPRD08851
Protein Interaction databases
DIP (DOE-UCLA)Q6FI13
IntAct (EBI)Q6FI13
FunCoupENSG00000203812
BioGRIDHIST2H2AA3
STRING (EMBL)HIST2H2AA3
ZODIACHIST2H2AA3
Ontologies - Pathways
QuickGOQ6FI13
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkHIST2H2AA3
Atlas of Cancer Signalling NetworkHIST2H2AA3
Wikipedia pathwaysHIST2H2AA3
Orthology - Evolution
OrthoDB8337
GeneTree (enSembl)ENSG00000203812
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2AA3
HOVERGENQ6FI13
HOGENOMQ6FI13
Homologs : HomoloGeneHIST2H2AA3
Homology/Alignments : Family Browser (UCSC)HIST2H2AA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2AA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2AA3
dbVarHIST2H2AA3
ClinVarHIST2H2AA3
1000_GenomesHIST2H2AA3 
Exome Variant ServerHIST2H2AA3
ExAC (Exome Aggregation Consortium)HIST2H2AA3 (select the gene name)
Genetic variants : HAPMAP8337
Genomic Variants (DGV)HIST2H2AA3 [DGVbeta]
DECIPHERHIST2H2AA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST2H2AA3 
Mutations
ICGC Data PortalHIST2H2AA3 
TCGA Data PortalHIST2H2AA3 
Broad Tumor PortalHIST2H2AA3
OASIS PortalHIST2H2AA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIST2H2AA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2AA3
DgiDB (Drug Gene Interaction Database)HIST2H2AA3
DoCM (Curated mutations)HIST2H2AA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2AA3 (select a term)
intoGenHIST2H2AA3
Cancer3DHIST2H2AA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142720   
Orphanet
MedgenHIST2H2AA3
Genetic Testing Registry HIST2H2AA3
NextProtQ6FI13 [Medical]
TSGene8337
GENETestsHIST2H2AA3
Target ValidationHIST2H2AA3
Huge Navigator HIST2H2AA3 [HugePedia]
snp3D : Map Gene to Disease8337
BioCentury BCIQHIST2H2AA3
ClinGenHIST2H2AA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8337
Chemical/Pharm GKB GenePA29113
Clinical trialHIST2H2AA3
Miscellaneous
canSAR (ICR)HIST2H2AA3 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2AA3
EVEXHIST2H2AA3
GoPubMedHIST2H2AA3
iHOPHIST2H2AA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:27 CEST 2017

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