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HIST2H2AA4 (histone cluster 2 H2A family member a4)

Identity

Alias_nameshistone 2, H2aa4
histone cluster 2, H2aa4
Alias_symbol (synonym)H2A/r
Other aliasH2A/R
HGNC (Hugo) HIST2H2AA4
LocusID (NCBI) 723790
Atlas_Id 64320
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149842218 and ends at 149842751 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2AA4   29668
Cards
Entrez_Gene (NCBI)HIST2H2AA4  723790  histone cluster 2 H2A family member a4
AliasesH2A/R
GeneCards (Weizmann)HIST2H2AA4
Ensembl hg19 (Hinxton)ENSG00000272196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272196 [Gene_View]  chr1:149842218-149842751 [Contig_View]  HIST2H2AA4 [Vega]
ICGC DataPortalENSG00000272196
TCGA cBioPortalHIST2H2AA4
AceView (NCBI)HIST2H2AA4
Genatlas (Paris)HIST2H2AA4
WikiGenes723790
SOURCE (Princeton)HIST2H2AA4
Genetics Home Reference (NIH)HIST2H2AA4
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H2AA4  -     chr1:149842218-149842751 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H2AA4  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblHIST2H2AA4 - 1q21.2 [CytoView hg19]  HIST2H2AA4 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2AA4 [Mapview hg19]  HIST2H2AA4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312163 BC001629 BC019308 BC096705 BC096739
RefSeq transcript (Entrez)NM_001040874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H2AA4
Cluster EST : UnigeneHs.745563 [ NCBI ]
CGAP (NCI)Hs.745563
Alternative Splicing GalleryENSG00000272196
Gene ExpressionHIST2H2AA4 [ NCBI-GEO ]   HIST2H2AA4 [ EBI - ARRAY_EXPRESS ]   HIST2H2AA4 [ SEEK ]   HIST2H2AA4 [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2AA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)723790
GTEX Portal (Tissue expression)HIST2H2AA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6FI13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6FI13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6FI13
Splice isoforms : SwissVarQ6FI13
PhosPhoSitePlusQ6FI13
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST2H2AA4
DMDM Disease mutations723790
Blocks (Seattle)HIST2H2AA4
SuperfamilyQ6FI13
Human Protein AtlasENSG00000272196
Peptide AtlasQ6FI13
IPIIPI00216457   
Protein Interaction databases
DIP (DOE-UCLA)Q6FI13
IntAct (EBI)Q6FI13
FunCoupENSG00000272196
BioGRIDHIST2H2AA4
STRING (EMBL)HIST2H2AA4
ZODIACHIST2H2AA4
Ontologies - Pathways
QuickGOQ6FI13
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkHIST2H2AA4
Atlas of Cancer Signalling NetworkHIST2H2AA4
Wikipedia pathwaysHIST2H2AA4
Orthology - Evolution
OrthoDB723790
GeneTree (enSembl)ENSG00000272196
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2AA4
HOVERGENQ6FI13
HOGENOMQ6FI13
Homologs : HomoloGeneHIST2H2AA4
Homology/Alignments : Family Browser (UCSC)HIST2H2AA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2AA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2AA4
dbVarHIST2H2AA4
ClinVarHIST2H2AA4
1000_GenomesHIST2H2AA4 
Exome Variant ServerHIST2H2AA4
ExAC (Exome Aggregation Consortium)HIST2H2AA4 (select the gene name)
Genetic variants : HAPMAP723790
Genomic Variants (DGV)HIST2H2AA4 [DGVbeta]
DECIPHERHIST2H2AA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST2H2AA4 
Mutations
ICGC Data PortalHIST2H2AA4 
TCGA Data PortalHIST2H2AA4 
Broad Tumor PortalHIST2H2AA4
OASIS PortalHIST2H2AA4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIST2H2AA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2AA4
DgiDB (Drug Gene Interaction Database)HIST2H2AA4
DoCM (Curated mutations)HIST2H2AA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2AA4 (select a term)
intoGenHIST2H2AA4
Cancer3DHIST2H2AA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIST2H2AA4
Genetic Testing Registry HIST2H2AA4
NextProtQ6FI13 [Medical]
TSGene723790
GENETestsHIST2H2AA4
Target ValidationHIST2H2AA4
Huge Navigator HIST2H2AA4 [HugePedia]
snp3D : Map Gene to Disease723790
BioCentury BCIQHIST2H2AA4
ClinGenHIST2H2AA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD723790
Chemical/Pharm GKB GenePA145148721
Clinical trialHIST2H2AA4
Miscellaneous
canSAR (ICR)HIST2H2AA4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2AA4
EVEXHIST2H2AA4
GoPubMedHIST2H2AA4
iHOPHIST2H2AA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:27 CEST 2017

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