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HIST2H2AB (histone cluster 2, H2ab)

Identity

Alias_nameshistone 2, H2ab
histone cluster 2, H2ab
Other aliasH2AB
HGNC (Hugo) HIST2H2AB
LocusID (NCBI) 317772
Atlas_Id 43754
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149859019 and ends at 149859466 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2AB   20508
Cards
Entrez_Gene (NCBI)HIST2H2AB  317772  histone cluster 2, H2ab
AliasesH2AB
GeneCards (Weizmann)HIST2H2AB
Ensembl hg19 (Hinxton)ENSG00000184270 [Gene_View]  chr1:149859019-149859466 [Contig_View]  HIST2H2AB [Vega]
Ensembl hg38 (Hinxton)ENSG00000184270 [Gene_View]  chr1:149859019-149859466 [Contig_View]  HIST2H2AB [Vega]
ICGC DataPortalENSG00000184270
TCGA cBioPortalHIST2H2AB
AceView (NCBI)HIST2H2AB
Genatlas (Paris)HIST2H2AB
WikiGenes317772
SOURCE (Princeton)HIST2H2AB
Genetics Home Reference (NIH)HIST2H2AB
Genomic and cartography
GoldenPath hg19 (UCSC)HIST2H2AB  -     chr1:149859019-149859466 -  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIST2H2AB  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblHIST2H2AB - 1q21.2 [CytoView hg19]  HIST2H2AB - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2AB [Mapview hg19]  HIST2H2AB [Mapview hg38]
OMIM615014   
Gene and transcription
Genbank (Entrez)BC172330
RefSeq transcript (Entrez)NM_175065
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)HIST2H2AB
Cluster EST : UnigeneHs.664173 [ NCBI ]
CGAP (NCI)Hs.664173
Alternative Splicing GalleryENSG00000184270
Gene ExpressionHIST2H2AB [ NCBI-GEO ]   HIST2H2AB [ EBI - ARRAY_EXPRESS ]   HIST2H2AB [ SEEK ]   HIST2H2AB [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2AB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317772
GTEX Portal (Tissue expression)HIST2H2AB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUE6
Splice isoforms : SwissVarQ8IUE6
PhosPhoSitePlusQ8IUE6
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST2H2AB
DMDM Disease mutations317772
Blocks (Seattle)HIST2H2AB
SuperfamilyQ8IUE6
Human Protein AtlasENSG00000184270
Peptide AtlasQ8IUE6
HPRD13659
IPIIPI00216730   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUE6
IntAct (EBI)Q8IUE6
FunCoupENSG00000184270
BioGRIDHIST2H2AB
STRING (EMBL)HIST2H2AB
ZODIACHIST2H2AB
Ontologies - Pathways
QuickGOQ8IUE6
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkHIST2H2AB
Atlas of Cancer Signalling NetworkHIST2H2AB
Wikipedia pathwaysHIST2H2AB
Orthology - Evolution
OrthoDB317772
GeneTree (enSembl)ENSG00000184270
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2AB
HOVERGENQ8IUE6
HOGENOMQ8IUE6
Homologs : HomoloGeneHIST2H2AB
Homology/Alignments : Family Browser (UCSC)HIST2H2AB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2AB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2AB
dbVarHIST2H2AB
ClinVarHIST2H2AB
1000_GenomesHIST2H2AB 
Exome Variant ServerHIST2H2AB
ExAC (Exome Aggregation Consortium)HIST2H2AB (select the gene name)
Genetic variants : HAPMAP317772
Genomic Variants (DGV)HIST2H2AB [DGVbeta]
DECIPHER (Syndromes)1:149859019-149859466  ENSG00000184270
CONAN: Copy Number AnalysisHIST2H2AB 
Mutations
ICGC Data PortalHIST2H2AB 
TCGA Data PortalHIST2H2AB 
Broad Tumor PortalHIST2H2AB
OASIS PortalHIST2H2AB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST2H2AB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST2H2AB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2AB
DgiDB (Drug Gene Interaction Database)HIST2H2AB
DoCM (Curated mutations)HIST2H2AB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2AB (select a term)
intoGenHIST2H2AB
Cancer3DHIST2H2AB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615014   
Orphanet
MedgenHIST2H2AB
Genetic Testing Registry HIST2H2AB
NextProtQ8IUE6 [Medical]
TSGene317772
GENETestsHIST2H2AB
Huge Navigator HIST2H2AB [HugePedia]
snp3D : Map Gene to Disease317772
BioCentury BCIQHIST2H2AB
ClinGenHIST2H2AB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317772
Chemical/Pharm GKB GenePA134884141
Clinical trialHIST2H2AB
Miscellaneous
canSAR (ICR)HIST2H2AB (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2AB
EVEXHIST2H2AB
GoPubMedHIST2H2AB
iHOPHIST2H2AB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:08 CET 2017

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