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HIST2H2AC (histone cluster 2, H2ac)

Identity

Alias_namesH2A
H2AFQ
H2A histone family, member Q
histone 2, H2ac
histone cluster 2, H2ac
Alias_symbol (synonym)H2A/q
Other aliasH2A-GL101
HGNC (Hugo) HIST2H2AC
LocusID (NCBI) 8338
Atlas_Id 51293
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149858525 and ends at 149858961 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2AC   4738
Cards
Entrez_Gene (NCBI)HIST2H2AC  8338  histone cluster 2, H2ac
AliasesH2A; H2A-GL101; H2A/q; H2AFQ
GeneCards (Weizmann)HIST2H2AC
Ensembl hg19 (Hinxton)ENSG00000184260 [Gene_View]  chr1:149858525-149858961 [Contig_View]  HIST2H2AC [Vega]
Ensembl hg38 (Hinxton)ENSG00000184260 [Gene_View]  chr1:149858525-149858961 [Contig_View]  HIST2H2AC [Vega]
ICGC DataPortalENSG00000184260
TCGA cBioPortalHIST2H2AC
AceView (NCBI)HIST2H2AC
Genatlas (Paris)HIST2H2AC
WikiGenes8338
SOURCE (Princeton)HIST2H2AC
Genetics Home Reference (NIH)HIST2H2AC
Genomic and cartography
GoldenPath hg19 (UCSC)HIST2H2AC  -     chr1:149858525-149858961 +  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIST2H2AC  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblHIST2H2AC - 1q21.2 [CytoView hg19]  HIST2H2AC - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2AC [Mapview hg19]  HIST2H2AC [Mapview hg38]
OMIM602797   
Gene and transcription
Genbank (Entrez)BC060324 EU446979
RefSeq transcript (Entrez)NM_003517
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)HIST2H2AC
Cluster EST : UnigeneHs.408067 [ NCBI ]
CGAP (NCI)Hs.408067
Alternative Splicing GalleryENSG00000184260
Gene ExpressionHIST2H2AC [ NCBI-GEO ]   HIST2H2AC [ EBI - ARRAY_EXPRESS ]   HIST2H2AC [ SEEK ]   HIST2H2AC [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2AC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8338
GTEX Portal (Tissue expression)HIST2H2AC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16777   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16777  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16777
Splice isoforms : SwissVarQ16777
PhosPhoSitePlusQ16777
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST2H2AC
DMDM Disease mutations8338
Blocks (Seattle)HIST2H2AC
SuperfamilyQ16777
Human Protein AtlasENSG00000184260
Peptide AtlasQ16777
HPRD09107
IPIIPI00339274   
Protein Interaction databases
DIP (DOE-UCLA)Q16777
IntAct (EBI)Q16777
FunCoupENSG00000184260
BioGRIDHIST2H2AC
STRING (EMBL)HIST2H2AC
ZODIACHIST2H2AC
Ontologies - Pathways
QuickGOQ16777
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkHIST2H2AC
Atlas of Cancer Signalling NetworkHIST2H2AC
Wikipedia pathwaysHIST2H2AC
Orthology - Evolution
OrthoDB8338
GeneTree (enSembl)ENSG00000184260
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2AC
HOVERGENQ16777
HOGENOMQ16777
Homologs : HomoloGeneHIST2H2AC
Homology/Alignments : Family Browser (UCSC)HIST2H2AC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2AC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2AC
dbVarHIST2H2AC
ClinVarHIST2H2AC
1000_GenomesHIST2H2AC 
Exome Variant ServerHIST2H2AC
ExAC (Exome Aggregation Consortium)HIST2H2AC (select the gene name)
Genetic variants : HAPMAP8338
Genomic Variants (DGV)HIST2H2AC [DGVbeta]
DECIPHER (Syndromes)1:149858525-149858961  ENSG00000184260
CONAN: Copy Number AnalysisHIST2H2AC 
Mutations
ICGC Data PortalHIST2H2AC 
TCGA Data PortalHIST2H2AC 
Broad Tumor PortalHIST2H2AC
OASIS PortalHIST2H2AC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST2H2AC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST2H2AC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2AC
DgiDB (Drug Gene Interaction Database)HIST2H2AC
DoCM (Curated mutations)HIST2H2AC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2AC (select a term)
intoGenHIST2H2AC
Cancer3DHIST2H2AC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602797   
Orphanet
MedgenHIST2H2AC
Genetic Testing Registry HIST2H2AC
NextProtQ16777 [Medical]
TSGene8338
GENETestsHIST2H2AC
Huge Navigator HIST2H2AC [HugePedia]
snp3D : Map Gene to Disease8338
BioCentury BCIQHIST2H2AC
ClinGenHIST2H2AC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8338
Chemical/Pharm GKB GenePA29115
Clinical trialHIST2H2AC
Miscellaneous
canSAR (ICR)HIST2H2AC (select the gene name)
Probes
Litterature
PubMed123 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2AC
EVEXHIST2H2AC
GoPubMedHIST2H2AC
iHOPHIST2H2AC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:08 CET 2017

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