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HIST2H2BC (histone cluster 2, H2bc (pseudogene))

Identity

Alias_nameshistone 2, H2bc
histone cluster 2, H2bc
histone cluster 2, H2bc (pseudogene)
Alias_symbol (synonym)H2B/t
Other aliasHIST2H2BD
HGNC (Hugo) HIST2H2BC
LocusID (NCBI) 337873
Atlas_Id 64322
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149821759 and ends at 149822340 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2BC   20516
Cards
Entrez_Gene (NCBI)HIST2H2BC  337873  histone cluster 2, H2bc (pseudogene)
AliasesH2B/t; HIST2H2BD
GeneCards (Weizmann)HIST2H2BC
Ensembl hg19 (Hinxton)ENSG00000203819 [Gene_View]  chr1:149821759-149822340 [Contig_View]  HIST2H2BC [Vega]
Ensembl hg38 (Hinxton)ENSG00000203819 [Gene_View]  chr1:149821759-149822340 [Contig_View]  HIST2H2BC [Vega]
ICGC DataPortalENSG00000203819
TCGA cBioPortalHIST2H2BC
AceView (NCBI)HIST2H2BC
Genatlas (Paris)HIST2H2BC
WikiGenes337873
SOURCE (Princeton)HIST2H2BC
Genetics Home Reference (NIH)HIST2H2BC
Genomic and cartography
GoldenPath hg19 (UCSC)HIST2H2BC  -     chr1:149821759-149822340 -  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIST2H2BC  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblHIST2H2BC - 1q21.2 [CytoView hg19]  HIST2H2BC - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2BC [Mapview hg19]  HIST2H2BC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK299891 BC071638
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)HIST2H2BC
Cluster EST : UnigeneHs.666643 [ NCBI ]
CGAP (NCI)Hs.666643
Alternative Splicing GalleryENSG00000203819
Gene ExpressionHIST2H2BC [ NCBI-GEO ]   HIST2H2BC [ EBI - ARRAY_EXPRESS ]   HIST2H2BC [ SEEK ]   HIST2H2BC [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2BC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337873
GTEX Portal (Tissue expression)HIST2H2BC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DN03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DN03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DN03
Splice isoforms : SwissVarQ6DN03
PhosPhoSitePlusQ6DN03
Domains : Interpro (EBI)Histone-fold    Histone_core_D    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST2H2BC
DMDM Disease mutations337873
Blocks (Seattle)HIST2H2BC
SuperfamilyQ6DN03
Human Protein AtlasENSG00000203819
Peptide AtlasQ6DN03
Protein Interaction databases
DIP (DOE-UCLA)Q6DN03
IntAct (EBI)Q6DN03
FunCoupENSG00000203819
BioGRIDHIST2H2BC
STRING (EMBL)HIST2H2BC
ZODIACHIST2H2BC
Ontologies - Pathways
QuickGOQ6DN03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHIST2H2BC
Atlas of Cancer Signalling NetworkHIST2H2BC
Wikipedia pathwaysHIST2H2BC
Orthology - Evolution
OrthoDB337873
GeneTree (enSembl)ENSG00000203819
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2BC
HOVERGENQ6DN03
HOGENOMQ6DN03
Homologs : HomoloGeneHIST2H2BC
Homology/Alignments : Family Browser (UCSC)HIST2H2BC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2BC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2BC
dbVarHIST2H2BC
ClinVarHIST2H2BC
1000_GenomesHIST2H2BC 
Exome Variant ServerHIST2H2BC
ExAC (Exome Aggregation Consortium)HIST2H2BC (select the gene name)
Genetic variants : HAPMAP337873
Genomic Variants (DGV)HIST2H2BC [DGVbeta]
DECIPHER (Syndromes)1:149821759-149822340  ENSG00000203819
CONAN: Copy Number AnalysisHIST2H2BC 
Mutations
ICGC Data PortalHIST2H2BC 
TCGA Data PortalHIST2H2BC 
Broad Tumor PortalHIST2H2BC
OASIS PortalHIST2H2BC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIST2H2BC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2BC
DgiDB (Drug Gene Interaction Database)HIST2H2BC
DoCM (Curated mutations)HIST2H2BC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2BC (select a term)
intoGenHIST2H2BC
Cancer3DHIST2H2BC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIST2H2BC
Genetic Testing Registry HIST2H2BC
NextProtQ6DN03 [Medical]
TSGene337873
GENETestsHIST2H2BC
Huge Navigator HIST2H2BC [HugePedia]
snp3D : Map Gene to Disease337873
BioCentury BCIQHIST2H2BC
ClinGenHIST2H2BC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337873
Chemical/Pharm GKB GenePA134885739
Clinical trialHIST2H2BC
Miscellaneous
canSAR (ICR)HIST2H2BC (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2BC
EVEXHIST2H2BC
GoPubMedHIST2H2BC
iHOPHIST2H2BC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:52 CET 2017

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