Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HIST2H2BD (histone cluster 2 H2B family member d (pseudogene))

Identity

Alias_namesH2BFO
histone 2, H2bd
H2B histone family, member O
histone cluster 2, H2bd (pseudogene)
Alias_symbol (synonym)H2B/s
H2B/o
Other alias
HGNC (Hugo) HIST2H2BD
LocusID (NCBI) 337874
Atlas_Id 77370
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149842974 and ends at 149843643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)HIST2H2BD   20517
Cards
Entrez_Gene (NCBI)HIST2H2BD  337874  histone cluster 2 H2B family member d (pseudogene)
AliasesH2B/o; H2B/s; H2BFO
GeneCards (Weizmann)HIST2H2BD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:149842974-149843643 [Contig_View]  HIST2H2BD [Vega]
TCGA cBioPortalHIST2H2BD
AceView (NCBI)HIST2H2BD
Genatlas (Paris)HIST2H2BD
WikiGenes337874
SOURCE (Princeton)HIST2H2BD
Genetics Home Reference (NIH)HIST2H2BD
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H2BD  -     chr1:149842974-149843643 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H2BD  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblHIST2H2BD - 1q21.2 [CytoView hg19]  HIST2H2BD - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2BD [Mapview hg19]  HIST2H2BD [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC068044
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H2BD
Cluster EST : UnigeneHs.595570 [ NCBI ]
CGAP (NCI)Hs.595570
Gene ExpressionHIST2H2BD [ NCBI-GEO ]   HIST2H2BD [ EBI - ARRAY_EXPRESS ]   HIST2H2BD [ SEEK ]   HIST2H2BD [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2BD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337874
GTEX Portal (Tissue expression)HIST2H2BD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DRA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DRA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DRA6
Splice isoforms : SwissVarQ6DRA6
PhosPhoSitePlusQ6DRA6
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST2H2BD
DMDM Disease mutations337874
Blocks (Seattle)HIST2H2BD
SuperfamilyQ6DRA6
Peptide AtlasQ6DRA6
IPIIPI00746251   
Protein Interaction databases
DIP (DOE-UCLA)Q6DRA6
IntAct (EBI)Q6DRA6
BioGRIDHIST2H2BD
STRING (EMBL)HIST2H2BD
ZODIACHIST2H2BD
Ontologies - Pathways
QuickGOQ6DRA6
Ontology : AmiGOnucleosome  DNA binding  nucleus  nucleosome assembly  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  nucleus  nucleosome assembly  protein heterodimerization activity  extracellular exosome  
NDEx NetworkHIST2H2BD
Atlas of Cancer Signalling NetworkHIST2H2BD
Wikipedia pathwaysHIST2H2BD
Orthology - Evolution
OrthoDB337874
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2BD
HOGENOMQ6DRA6
Homologs : HomoloGeneHIST2H2BD
Homology/Alignments : Family Browser (UCSC)HIST2H2BD
Gene fusions - Rearrangements
Fusion : QuiverHIST2H2BD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2BD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2BD
dbVarHIST2H2BD
ClinVarHIST2H2BD
1000_GenomesHIST2H2BD 
Exome Variant ServerHIST2H2BD
Varsome BrowserHIST2H2BD
Genetic variants : HAPMAP337874
Genomic Variants (DGV)HIST2H2BD [DGVbeta]
DECIPHERHIST2H2BD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST2H2BD 
Mutations
ICGC Data PortalHIST2H2BD 
TCGA Data PortalHIST2H2BD 
Broad Tumor PortalHIST2H2BD
OASIS PortalHIST2H2BD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHIST2H2BD
BioMutasearch HIST2H2BD
DgiDB (Drug Gene Interaction Database)HIST2H2BD
DoCM (Curated mutations)HIST2H2BD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2BD (select a term)
intoGenHIST2H2BD
Cancer3DHIST2H2BD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHIST2H2BD
MedgenHIST2H2BD
Genetic Testing Registry HIST2H2BD
NextProtQ6DRA6 [Medical]
TSGene337874
GENETestsHIST2H2BD
Target ValidationHIST2H2BD
Huge Navigator HIST2H2BD [HugePedia]
snp3D : Map Gene to Disease337874
BioCentury BCIQHIST2H2BD
ClinGenHIST2H2BD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337874
Chemical/Pharm GKB GenePA134910805
Clinical trialHIST2H2BD
Miscellaneous
canSAR (ICR)HIST2H2BD (select the gene name)
DataMed IndexHIST2H2BD
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2BD
EVEXHIST2H2BD
GoPubMedHIST2H2BD
iHOPHIST2H2BD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 15:10:48 CET 2019
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