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HIST2H2BF (histone cluster 2 H2B family member f)

Identity

Alias_nameshistone 2, H2bf
histone cluster 2, H2bf
Other alias-
HGNC (Hugo) HIST2H2BF
LocusID (NCBI) 440689
Atlas_Id 64323
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149811879 and ends at 149812373 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HIST2H2BF (1q21.2) / MICAL3 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H2BF   24700
Cards
Entrez_Gene (NCBI)HIST2H2BF  440689  histone cluster 2 H2B family member f
Aliases
GeneCards (Weizmann)HIST2H2BF
Ensembl hg19 (Hinxton)ENSG00000203814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203814 [Gene_View]  chr1:149811879-149812373 [Contig_View]  HIST2H2BF [Vega]
ICGC DataPortalENSG00000203814
TCGA cBioPortalHIST2H2BF
AceView (NCBI)HIST2H2BF
Genatlas (Paris)HIST2H2BF
WikiGenes440689
SOURCE (Princeton)HIST2H2BF
Genetics Home Reference (NIH)HIST2H2BF
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H2BF  -     chr1:149811879-149812373 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H2BF  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblHIST2H2BF - 1q21.2 [CytoView hg19]  HIST2H2BF - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H2BF [Mapview hg19]  HIST2H2BF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092418 AK289664 AK296916 AK299108 BC110793
RefSeq transcript (Entrez)NM_001024599 NM_001161334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H2BF
Cluster EST : UnigeneHs.632451 [ NCBI ]
CGAP (NCI)Hs.632451
Alternative Splicing GalleryENSG00000203814
Gene ExpressionHIST2H2BF [ NCBI-GEO ]   HIST2H2BF [ EBI - ARRAY_EXPRESS ]   HIST2H2BF [ SEEK ]   HIST2H2BF [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H2BF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440689
GTEX Portal (Tissue expression)HIST2H2BF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5QNW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5QNW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5QNW6
Splice isoforms : SwissVarQ5QNW6
PhosPhoSitePlusQ5QNW6
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST2H2BF
DMDM Disease mutations440689
Blocks (Seattle)HIST2H2BF
SuperfamilyQ5QNW6
Human Protein AtlasENSG00000203814
Peptide AtlasQ5QNW6
HPRD18639
IPIIPI00329665   IPI00646240   IPI00744321   IPI00930174   
Protein Interaction databases
DIP (DOE-UCLA)Q5QNW6
IntAct (EBI)Q5QNW6
FunCoupENSG00000203814
BioGRIDHIST2H2BF
STRING (EMBL)HIST2H2BF
ZODIACHIST2H2BF
Ontologies - Pathways
QuickGOQ5QNW6
Ontology : AmiGOnucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkHIST2H2BF
Atlas of Cancer Signalling NetworkHIST2H2BF
Wikipedia pathwaysHIST2H2BF
Orthology - Evolution
OrthoDB440689
GeneTree (enSembl)ENSG00000203814
Phylogenetic Trees/Animal Genes : TreeFamHIST2H2BF
HOVERGENQ5QNW6
HOGENOMQ5QNW6
Homologs : HomoloGeneHIST2H2BF
Homology/Alignments : Family Browser (UCSC)HIST2H2BF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H2BF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H2BF
dbVarHIST2H2BF
ClinVarHIST2H2BF
1000_GenomesHIST2H2BF 
Exome Variant ServerHIST2H2BF
ExAC (Exome Aggregation Consortium)HIST2H2BF (select the gene name)
Genetic variants : HAPMAP440689
Genomic Variants (DGV)HIST2H2BF [DGVbeta]
DECIPHERHIST2H2BF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST2H2BF 
Mutations
ICGC Data PortalHIST2H2BF 
TCGA Data PortalHIST2H2BF 
Broad Tumor PortalHIST2H2BF
OASIS PortalHIST2H2BF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST2H2BF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST2H2BF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H2BF
DgiDB (Drug Gene Interaction Database)HIST2H2BF
DoCM (Curated mutations)HIST2H2BF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H2BF (select a term)
intoGenHIST2H2BF
Cancer3DHIST2H2BF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIST2H2BF
Genetic Testing Registry HIST2H2BF
NextProtQ5QNW6 [Medical]
TSGene440689
GENETestsHIST2H2BF
Target ValidationHIST2H2BF
Huge Navigator HIST2H2BF [HugePedia]
snp3D : Map Gene to Disease440689
BioCentury BCIQHIST2H2BF
ClinGenHIST2H2BF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440689
Chemical/Pharm GKB GenePA145148722
Clinical trialHIST2H2BF
Miscellaneous
canSAR (ICR)HIST2H2BF (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H2BF
EVEXHIST2H2BF
GoPubMedHIST2H2BF
iHOPHIST2H2BF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:28 CEST 2017

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