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HIST2H3D (histone cluster 2 H3 family member d)

Identity

Alias_nameshistone 2, H3d
histone cluster 2, H3d
Other alias-
HGNC (Hugo) HIST2H3D
LocusID (NCBI) 653604
Atlas_Id 64324
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149813225 and ends at 149813681 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST2H3D   25311
Cards
Entrez_Gene (NCBI)HIST2H3D  653604  histone cluster 2 H3 family member d
Aliases
GeneCards (Weizmann)HIST2H3D
Ensembl hg19 (Hinxton)ENSG00000183598 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183598 [Gene_View]  chr1:149813225-149813681 [Contig_View]  HIST2H3D [Vega]
ICGC DataPortalENSG00000183598
TCGA cBioPortalHIST2H3D
AceView (NCBI)HIST2H3D
Genatlas (Paris)HIST2H3D
WikiGenes653604
SOURCE (Princeton)HIST2H3D
Genetics Home Reference (NIH)HIST2H3D
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H3D  -     chr1:149813225-149813681 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H3D  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblHIST2H3D - 1q21.2 [CytoView hg19]  HIST2H3D - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIHIST2H3D [Mapview hg19]  HIST2H3D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001123375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H3D
Cluster EST : UnigeneHs.712062 [ NCBI ]
CGAP (NCI)Hs.712062
Alternative Splicing GalleryENSG00000183598
Gene ExpressionHIST2H3D [ NCBI-GEO ]   HIST2H3D [ EBI - ARRAY_EXPRESS ]   HIST2H3D [ SEEK ]   HIST2H3D [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653604
GTEX Portal (Tissue expression)HIST2H3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71DI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71DI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71DI3
Splice isoforms : SwissVarQ71DI3
PhosPhoSitePlusQ71DI3
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST2H3D
DMDM Disease mutations653604
Blocks (Seattle)HIST2H3D
PDB (SRS)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
PDB (PDBSum)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
PDB (IMB)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
PDB (RSDB)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
Structural Biology KnowledgeBase2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
SCOP (Structural Classification of Proteins)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
CATH (Classification of proteins structures)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU   
SuperfamilyQ71DI3
Human Protein AtlasENSG00000183598
Peptide AtlasQ71DI3
Protein Interaction databases
DIP (DOE-UCLA)Q71DI3
IntAct (EBI)Q71DI3
FunCoupENSG00000183598
BioGRIDHIST2H3D
STRING (EMBL)HIST2H3D
ZODIACHIST2H3D
Ontologies - Pathways
QuickGOQ71DI3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  chromatin silencing at rDNA  nucleosome  DNA binding  chromatin binding  protein binding  extracellular region  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  blood coagulation  gene silencing by RNA  histone binding  cellular protein metabolic process  negative regulation of gene expression, epigenetic  positive regulation of gene expression, epigenetic  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  chromatin silencing at rDNA  nucleosome  DNA binding  chromatin binding  protein binding  extracellular region  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  blood coagulation  gene silencing by RNA  histone binding  cellular protein metabolic process  negative regulation of gene expression, epigenetic  positive regulation of gene expression, epigenetic  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Transcriptional misregulation in cancer    Systemic lupus erythematosus   
NDEx NetworkHIST2H3D
Atlas of Cancer Signalling NetworkHIST2H3D
Wikipedia pathwaysHIST2H3D
Orthology - Evolution
OrthoDB653604
GeneTree (enSembl)ENSG00000183598
Phylogenetic Trees/Animal Genes : TreeFamHIST2H3D
HOVERGENQ71DI3
HOGENOMQ71DI3
Homologs : HomoloGeneHIST2H3D
Homology/Alignments : Family Browser (UCSC)HIST2H3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST2H3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST2H3D
dbVarHIST2H3D
ClinVarHIST2H3D
1000_GenomesHIST2H3D 
Exome Variant ServerHIST2H3D
ExAC (Exome Aggregation Consortium)HIST2H3D (select the gene name)
Genetic variants : HAPMAP653604
Genomic Variants (DGV)HIST2H3D [DGVbeta]
DECIPHERHIST2H3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST2H3D 
Mutations
ICGC Data PortalHIST2H3D 
TCGA Data PortalHIST2H3D 
Broad Tumor PortalHIST2H3D
OASIS PortalHIST2H3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST2H3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST2H3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST2H3D
DgiDB (Drug Gene Interaction Database)HIST2H3D
DoCM (Curated mutations)HIST2H3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST2H3D (select a term)
intoGenHIST2H3D
Cancer3DHIST2H3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHIST2H3D
Genetic Testing Registry HIST2H3D
NextProtQ71DI3 [Medical]
TSGene653604
GENETestsHIST2H3D
Target ValidationHIST2H3D
Huge Navigator HIST2H3D [HugePedia]
snp3D : Map Gene to Disease653604
BioCentury BCIQHIST2H3D
ClinGenHIST2H3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653604
Chemical/Pharm GKB GenePA145148728
Clinical trialHIST2H3D
Miscellaneous
canSAR (ICR)HIST2H3D (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H3D
EVEXHIST2H3D
GoPubMedHIST2H3D
iHOPHIST2H3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:33 CEST 2017

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