Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HIST2H3PS2 (histone cluster 2 H3 pseudogene 2)

Identity

Other aliasp06
HGNC (Hugo) HIST2H3PS2
LocusID (NCBI) 440686
Atlas_Id 80557
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 143897846 and ends at 143905974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HIST2H3PS2   32060
Cards
Entrez_Gene (NCBI)HIST2H3PS2  440686  histone cluster 2 H3 pseudogene 2
Aliasesp06
GeneCards (Weizmann)HIST2H3PS2
Ensembl hg19 (Hinxton)ENSG00000203818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203818 [Gene_View]  ENSG00000203818 [Sequence]  chr1:143897846-143905974 [Contig_View]  HIST2H3PS2 [Vega]
ICGC DataPortalENSG00000203818
TCGA cBioPortalHIST2H3PS2
AceView (NCBI)HIST2H3PS2
Genatlas (Paris)HIST2H3PS2
WikiGenes440686
SOURCE (Princeton)HIST2H3PS2
Genetics Home Reference (NIH)HIST2H3PS2
Genomic and cartography
GoldenPath hg38 (UCSC)HIST2H3PS2  -     chr1:143897846-143905974 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST2H3PS2  -     1q21.1   [Description]    (hg19-Feb_2009)
GoldenPathHIST2H3PS2 - 1q21.1 [CytoView hg19]  HIST2H3PS2 - 1q21.1 [CytoView hg38]
ImmunoBaseENSG00000203818
Mapping of homologs : NCBIHIST2H3PS2 [Mapview hg19]  HIST2H3PS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001025303 NM_001355409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST2H3PS2
Alternative Splicing GalleryENSG00000203818
Gene ExpressionHIST2H3PS2 [ NCBI-GEO ]   HIST2H3PS2 [ EBI - ARRAY_EXPRESS ]   HIST2H3PS2 [ SEEK ]   HIST2H3PS2 [ MEM ]
Gene Expression Viewer (FireBrowse)HIST2H3PS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440686
GTEX Portal (Tissue expression)HIST2H3PS2
Human Protein AtlasENSG00000203818-HIST2H3PS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HIST2H3PS2
DMDM Disease mutations440686
Blocks (Seattle)HIST2H3PS2
Human Protein Atlas [tissue]ENSG00000203818-HIST2H3PS2 [tissue]
Protein Interaction databases
FunCoupENSG00000203818
BioGRIDHIST2H3PS2
STRING (EMBL)HIST2H3PS2
ZODIACHIST2H3PS2
Ontologies - Pathways
Huge Navigator HIST2H3PS2 [HugePedia]
snp3D : Map Gene to Disease440686
BioCentury BCIQHIST2H3PS2
ClinGenHIST2H3PS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440686
Chemical/Pharm GKB GenePA145148729
Clinical trialHIST2H3PS2
Miscellaneous
canSAR (ICR)HIST2H3PS2 (select the gene name)
DataMed IndexHIST2H3PS2
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST2H3PS2
EVEXHIST2H3PS2
GoPubMedHIST2H3PS2
iHOPHIST2H3PS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Feb 3 15:49:22 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.