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HIST3H2A (histone cluster 3 H2A)

Identity

Alias_nameshistone 3, H2a
histone cluster 3, H2a
Alias_symbol (synonym)MGC3165
Other alias-
HGNC (Hugo) HIST3H2A
LocusID (NCBI) 92815
Atlas_Id 53872
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228457364 and ends at 228457859 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST3H2A   20507
Cards
Entrez_Gene (NCBI)HIST3H2A  92815  histone cluster 3 H2A
Aliases
GeneCards (Weizmann)HIST3H2A
Ensembl hg19 (Hinxton)ENSG00000181218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181218 [Gene_View]  chr1:228457364-228457859 [Contig_View]  HIST3H2A [Vega]
ICGC DataPortalENSG00000181218
TCGA cBioPortalHIST3H2A
AceView (NCBI)HIST3H2A
Genatlas (Paris)HIST3H2A
WikiGenes92815
SOURCE (Princeton)HIST3H2A
Genetics Home Reference (NIH)HIST3H2A
Genomic and cartography
GoldenPath hg38 (UCSC)HIST3H2A  -     chr1:228457364-228457859 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST3H2A  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblHIST3H2A - 1q42.13 [CytoView hg19]  HIST3H2A - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIHIST3H2A [Mapview hg19]  HIST3H2A [Mapview hg38]
OMIM615015   
Gene and transcription
Genbank (Entrez)AK311930 BC001193 BC082269
RefSeq transcript (Entrez)NM_033445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST3H2A
Cluster EST : UnigeneHs.732533 [ NCBI ]
CGAP (NCI)Hs.732533
Alternative Splicing GalleryENSG00000181218
Gene ExpressionHIST3H2A [ NCBI-GEO ]   HIST3H2A [ EBI - ARRAY_EXPRESS ]   HIST3H2A [ SEEK ]   HIST3H2A [ MEM ]
Gene Expression Viewer (FireBrowse)HIST3H2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92815
GTEX Portal (Tissue expression)HIST3H2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L7L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L7L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L7L0
Splice isoforms : SwissVarQ7L7L0
PhosPhoSitePlusQ7L7L0
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)HIST3H2A
DMDM Disease mutations92815
Blocks (Seattle)HIST3H2A
SuperfamilyQ7L7L0
Human Protein AtlasENSG00000181218
Peptide AtlasQ7L7L0
HPRD13660
IPIIPI00031562   
Protein Interaction databases
DIP (DOE-UCLA)Q7L7L0
IntAct (EBI)Q7L7L0
FunCoupENSG00000181218
BioGRIDHIST3H2A
STRING (EMBL)HIST3H2A
ZODIACHIST3H2A
Ontologies - Pathways
QuickGOQ7L7L0
Ontology : AmiGOnuclear nucleosome  DNA binding  nucleosome disassembly  chromatin silencing  protein heterodimerization activity  extracellular exosome  UV-damage excision repair  
Ontology : EGO-EBInuclear nucleosome  DNA binding  nucleosome disassembly  chromatin silencing  protein heterodimerization activity  extracellular exosome  UV-damage excision repair  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkHIST3H2A
Atlas of Cancer Signalling NetworkHIST3H2A
Wikipedia pathwaysHIST3H2A
Orthology - Evolution
OrthoDB92815
GeneTree (enSembl)ENSG00000181218
Phylogenetic Trees/Animal Genes : TreeFamHIST3H2A
HOVERGENQ7L7L0
HOGENOMQ7L7L0
Homologs : HomoloGeneHIST3H2A
Homology/Alignments : Family Browser (UCSC)HIST3H2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST3H2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST3H2A
dbVarHIST3H2A
ClinVarHIST3H2A
1000_GenomesHIST3H2A 
Exome Variant ServerHIST3H2A
ExAC (Exome Aggregation Consortium)HIST3H2A (select the gene name)
Genetic variants : HAPMAP92815
Genomic Variants (DGV)HIST3H2A [DGVbeta]
DECIPHERHIST3H2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST3H2A 
Mutations
ICGC Data PortalHIST3H2A 
TCGA Data PortalHIST3H2A 
Broad Tumor PortalHIST3H2A
OASIS PortalHIST3H2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST3H2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST3H2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST3H2A
DgiDB (Drug Gene Interaction Database)HIST3H2A
DoCM (Curated mutations)HIST3H2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST3H2A (select a term)
intoGenHIST3H2A
Cancer3DHIST3H2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615015   
Orphanet
MedgenHIST3H2A
Genetic Testing Registry HIST3H2A
NextProtQ7L7L0 [Medical]
TSGene92815
GENETestsHIST3H2A
Target ValidationHIST3H2A
Huge Navigator HIST3H2A [HugePedia]
snp3D : Map Gene to Disease92815
BioCentury BCIQHIST3H2A
ClinGenHIST3H2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92815
Chemical/Pharm GKB GenePA134962147
Clinical trialHIST3H2A
Miscellaneous
canSAR (ICR)HIST3H2A (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST3H2A
EVEXHIST3H2A
GoPubMedHIST3H2A
iHOPHIST3H2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:36:56 CEST 2017

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