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HIST3H2BB (histone cluster 3 H2B family member b)

Identity

Alias_nameshistone 3, H2bb
histone cluster 3, H2bb
Other aliasH2Bb
HGNC (Hugo) HIST3H2BB
LocusID (NCBI) 128312
Atlas_Id 52216
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228458107 and ends at 228458558 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST3H2BB   20514
Cards
Entrez_Gene (NCBI)HIST3H2BB  128312  histone cluster 3 H2B family member b
AliasesH2Bb
GeneCards (Weizmann)HIST3H2BB
Ensembl hg19 (Hinxton)ENSG00000196890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196890 [Gene_View]  chr1:228458107-228458558 [Contig_View]  HIST3H2BB [Vega]
ICGC DataPortalENSG00000196890
TCGA cBioPortalHIST3H2BB
AceView (NCBI)HIST3H2BB
Genatlas (Paris)HIST3H2BB
WikiGenes128312
SOURCE (Princeton)HIST3H2BB
Genetics Home Reference (NIH)HIST3H2BB
Genomic and cartography
GoldenPath hg38 (UCSC)HIST3H2BB  -     chr1:228458107-228458558 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST3H2BB  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblHIST3H2BB - 1q42.13 [CytoView hg19]  HIST3H2BB - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIHIST3H2BB [Mapview hg19]  HIST3H2BB [Mapview hg38]
OMIM615046   
Gene and transcription
Genbank (Entrez)AK091220 BC100855 BC100856 BC100857 BC100858
RefSeq transcript (Entrez)NM_175055
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST3H2BB
Cluster EST : UnigeneHs.376691 [ NCBI ]
CGAP (NCI)Hs.376691
Alternative Splicing GalleryENSG00000196890
Gene ExpressionHIST3H2BB [ NCBI-GEO ]   HIST3H2BB [ EBI - ARRAY_EXPRESS ]   HIST3H2BB [ SEEK ]   HIST3H2BB [ MEM ]
Gene Expression Viewer (FireBrowse)HIST3H2BB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128312
GTEX Portal (Tissue expression)HIST3H2BB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N257   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N257  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N257
Splice isoforms : SwissVarQ8N257
PhosPhoSitePlusQ8N257
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)HIST3H2BB
DMDM Disease mutations128312
Blocks (Seattle)HIST3H2BB
SuperfamilyQ8N257
Human Protein AtlasENSG00000196890
Peptide AtlasQ8N257
HPRD13661
IPIIPI00166293   
Protein Interaction databases
DIP (DOE-UCLA)Q8N257
IntAct (EBI)Q8N257
FunCoupENSG00000196890
BioGRIDHIST3H2BB
STRING (EMBL)HIST3H2BB
ZODIACHIST3H2BB
Ontologies - Pathways
QuickGOQ8N257
Ontology : AmiGOnucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  
Ontology : EGO-EBInucleosome  molecular_function  DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkHIST3H2BB
Atlas of Cancer Signalling NetworkHIST3H2BB
Wikipedia pathwaysHIST3H2BB
Orthology - Evolution
OrthoDB128312
GeneTree (enSembl)ENSG00000196890
Phylogenetic Trees/Animal Genes : TreeFamHIST3H2BB
HOVERGENQ8N257
HOGENOMQ8N257
Homologs : HomoloGeneHIST3H2BB
Homology/Alignments : Family Browser (UCSC)HIST3H2BB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST3H2BB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST3H2BB
dbVarHIST3H2BB
ClinVarHIST3H2BB
1000_GenomesHIST3H2BB 
Exome Variant ServerHIST3H2BB
ExAC (Exome Aggregation Consortium)HIST3H2BB (select the gene name)
Genetic variants : HAPMAP128312
Genomic Variants (DGV)HIST3H2BB [DGVbeta]
DECIPHERHIST3H2BB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST3H2BB 
Mutations
ICGC Data PortalHIST3H2BB 
TCGA Data PortalHIST3H2BB 
Broad Tumor PortalHIST3H2BB
OASIS PortalHIST3H2BB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST3H2BB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST3H2BB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST3H2BB
DgiDB (Drug Gene Interaction Database)HIST3H2BB
DoCM (Curated mutations)HIST3H2BB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST3H2BB (select a term)
intoGenHIST3H2BB
Cancer3DHIST3H2BB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615046   
Orphanet
MedgenHIST3H2BB
Genetic Testing Registry HIST3H2BB
NextProtQ8N257 [Medical]
TSGene128312
GENETestsHIST3H2BB
Huge Navigator HIST3H2BB [HugePedia]
snp3D : Map Gene to Disease128312
BioCentury BCIQHIST3H2BB
ClinGenHIST3H2BB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128312
Chemical/Pharm GKB GenePA134875583
Clinical trialHIST3H2BB
Miscellaneous
canSAR (ICR)HIST3H2BB (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST3H2BB
EVEXHIST3H2BB
GoPubMedHIST3H2BB
iHOPHIST3H2BB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:18:55 CEST 2017

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